Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_A07
         (652 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   1.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.9  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
 Frame = -2

Query: 399 YYSILNNNVCDIIG-LFYYNLTPTTLHFSIIFSYYYFTLSKVWCNPIQELHSHLKTNKTS 223
           YY  LN  +  + G L+Y++ T   + ++++   Y     +  C   + +       + S
Sbjct: 301 YYPDLNEWLYILSGCLYYFSTTINPILYNLMSIKYRNAFKQTICCKTRIIGRRSWVTRES 360

Query: 222 SICWESSDHHRGYXFIQCS 166
            IC  SS         +CS
Sbjct: 361 QICNNSSSDKERNSSFKCS 379


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 89  RRRXKTXAGNADQPSERDLHSLQAT 15
           +R  K+  G+  QP  + LH  Q+T
Sbjct: 796 KRLSKSVNGDQSQPPHQQLHHHQST 820


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,445
Number of Sequences: 438
Number of extensions: 3119
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)