Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_A06
         (757 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    24   1.3  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    24   1.8  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    22   5.4  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    22   5.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   7.1  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   9.4  

>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +1

Query: 346 YNTNYYNRNSPTNCVNQIAASVYSN 420
           YN N YN N+  N  N     +Y N
Sbjct: 333 YNNNNYNNNNYNNNYNNNCKKLYYN 357


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +1

Query: 340 SFYNTNYYNRNSPTNCVNQIAASVYSN-EKVFPIALNFRDI 459
           + +N N YN N+  N  N    + Y+N +K++   +N   I
Sbjct: 322 TIHNNNNYNNNNYNNNYNNYNNNNYNNYKKLYYNIINIEQI 362


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 301 KFSGYQRHYFSVDSFYNTNYYN 366
           K+S Y  +  + ++ YN NY N
Sbjct: 90  KYSNYNNYNNNYNNNYNNNYNN 111


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 301 KFSGYQRHYFSVDSFYNTNYYN 366
           K+S Y  +  + ++ YN NY N
Sbjct: 90  KYSNYNNYNNNYNNNYNNNYNN 111


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 592 KLVSLNMSNNFLSIAQLSNVHELPSLADIDLSVNNILEIQT 714
           +L+ LN+S N L+        +L  L  +DL  N+I  I++
Sbjct: 336 RLIVLNLSYNMLTHIDARMFKDLFFLQILDLRNNSIDRIES 376


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 6/15 (40%), Positives = 15/15 (100%)
 Frame = +2

Query: 221 YYLSFSRVHAVSVLT 265
           +Y++FS++++VSV++
Sbjct: 296 FYMAFSKLYSVSVVS 310


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,411
Number of Sequences: 438
Number of extensions: 3568
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)