Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_A05
         (738 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr 1|||M...    38   0.001
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo...    36   0.005
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    29   0.52 
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    28   1.6  
SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha...    28   1.6  
SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces p...    26   4.9  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    25   8.5  

>SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 274

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 1/103 (0%)
 Frame = +1

Query: 151 VDIGVL-EEKPSWLLHPRFFPSKIGGKPSWLNLQDLPKSSELLCKKCQDPTVFLCQVYAP 327
           VD+G L +EK     +     S++GG P ++   D    +E L    ++   FL Q+YAP
Sbjct: 4   VDLGFLSQEKLDEKDYLDIECSRVGGAPLFIRKNDAAFLNESL----ENSFEFLMQLYAP 59

Query: 328 FEDVEDCFHRTIFIFICKNGNCCSKNNTDNFIVLRCQLPRTND 456
            ++ E  +HR ++IFI ++G+  +   T    V R Q   T++
Sbjct: 60  -KNSEISYHRILYIFINRDGDSQTAGWTRGVKVFREQARETDE 101


>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 36.3 bits (80), Expect = 0.005
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +1

Query: 508 NWTKLCDVCGARG--PAHCSRCKKMYYCSRKHQIIDWQKGHKEQCPQLQS 651
           N T+ C  C         C+ CK ++YCS+  Q  DW   HK +C  LQ+
Sbjct: 44  NLTRTCSTCTEEKVKTQRCAACKIIHYCSKGCQKADW-PFHKLECKALQA 92


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 29.5 bits (63), Expect = 0.52
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 550 AHCSRCKKMYYCSRKHQIIDWQKGHKEQC 636
           A C RC++  YCS++ Q   W  GH   C
Sbjct: 496 AKCRRCRRTKYCSKECQHQAW-PGHSRWC 523


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 17/61 (27%), Positives = 27/61 (44%)
 Frame = +1

Query: 58   YLKNEKRF*HYIKILNWI*YNTVFV*MEPRKVDIGVLEEKPSWLLHPRFFPSKIGGKPSW 237
            +L ++  F    KI+NWI Y       + R   + +     +W     F+PS+ G  P W
Sbjct: 1831 HLTSQDDFDGISKIVNWISYIP-----DKRNNPVPISPSSDTWDRDVEFYPSQNGYDPRW 1885

Query: 238  L 240
            L
Sbjct: 1886 L 1886


>SPBC29A3.05 |||chromatin remodeling complex
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 139

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 517 KLCDVCGARGPAHCSRCKKMYYCSRKHQII 606
           K C+VCG  G   C  C    YCS+  ++I
Sbjct: 100 KFCNVCGYWGKYACQNCGTS-YCSKGCEVI 128


>SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 579

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
 Frame = +1

Query: 454 DFYSYQP--YEEKDEEFPMDNWTKLCD 528
           D+Y ++P  Y EK E  P +NW    D
Sbjct: 132 DWYFWKPARYNEKGERLPPNNWRSYFD 158


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1131

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 5/29 (17%)
 Frame = +1

Query: 466  YQPYEEKDE-----EFPMDNWTKLCDVCG 537
            Y P EE +      + P + W K C+VCG
Sbjct: 940  YVPAEESEPVCGIAQLPPNRWEKKCEVCG 968


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,986,945
Number of Sequences: 5004
Number of extensions: 65367
Number of successful extensions: 162
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)