Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_A05
         (738 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.74 
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    23   2.3  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   4.0  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   6.9  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   9.1  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.0 bits (52), Expect = 0.74
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 355 YESNLLHLRTEHKLDTR 305
           Y++ L HL TEH LD R
Sbjct: 295 YQAFLKHLNTEHTLDDR 311


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -1

Query: 423 NKVISVVFTATISIFT 376
           NKV+SV +TA I +F+
Sbjct: 149 NKVVSVFYTAVIPMFS 164


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +1

Query: 544 GPAHCSRCKKMYY 582
           GP+HC  C+  +Y
Sbjct: 190 GPSHCVVCQNFFY 202



 Score = 22.2 bits (45), Expect = 5.2
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 613 QKGHKEQCPQLQ 648
           +K H+ QCP LQ
Sbjct: 305 RKSHESQCPMLQ 316


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 11/56 (19%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = +1

Query: 574 MYYCSRKHQIIDW----QKGHKEQCPQLQSGDIVSTNNFKITKAGQSVLFKEWELI 729
           +Y C   H  + W    Q+G++++C     G + S + + + +   +     WE +
Sbjct: 82  LYVCRVLHTTV-WVAGAQRGNEQRCTVTMHGTVQSYDKYDLLENVNNAARINWEYL 136


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +2

Query: 512 GQNCVMYVVLEDLLIVQGVRKCTTVVGNIKL-LTGKRAI 625
           G+N V Y   ED+L  Q + K  +  G + + L G  A+
Sbjct: 287 GENNVQYQGSEDILNTQSLAKAVSKNGVLFVGLVGNSAV 325


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,721
Number of Sequences: 438
Number of extensions: 4667
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)