Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_A03
         (826 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||...    29   1.1  
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    27   2.4  
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po...    27   2.4  
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c...    26   7.5  
SPBC409.08 |||spermine family transporter |Schizosaccharomyces p...    25   9.9  
SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces pom...    25   9.9  
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    25   9.9  

>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 408

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 27/126 (21%), Positives = 60/126 (47%), Gaps = 12/126 (9%)
 Frame = +1

Query: 61  CNSHTEQTXLFIVIHQYVAKMXQQKELGMKCIKYMLLCITAIFVLTSALTISVGTTIY-- 234
           CNS  +   +F+V   Y+A +       +  + ++ +    +++ +  LT ++G   Y  
Sbjct: 198 CNSSIKFRQIFVVFLFYLAGLIITSGFFLNSLSFLKIPFR-VYLDSHDLTPNLGLWWYFF 256

Query: 235 -AIYHDI-SFFLSPYAFSPAIFVIAIGVIMLF------VSLFGCIGALK--ESTCLVNIF 384
             ++++  +FFL  +A  P +FV+ + + + +      ++L G     K   S C ++IF
Sbjct: 257 TEMFNEFRTFFLFVFAILPLMFVLPVSIRLYYLPLPITIALIGLHSLFKAYPSICDLSIF 316

Query: 385 AVILSI 402
             +L I
Sbjct: 317 LSLLPI 322


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1207

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
 Frame = -2

Query: 804  EADGQRAGSK*SSALVNQIIDSGQATVGIDLMALYNR---LFTDDSHVGLG----AARIG 646
            E DG           VN ++D   A VG D + L+ R   L  D  H+  G    A +I 
Sbjct: 875  EVDGWEVEDLAPEEAVNDVVDDASAFVGADEIFLWKRNSPLAAD--HIAAGDFESAMKIL 932

Query: 645  DREVGKANAGP 613
            +++VG  N  P
Sbjct: 933  NKQVGAINFSP 943


>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 345 DAAEERDE*HYDANRDDKDSRGEGVWRQEERD 250
           DA EE +E   D   ++ D  GEG   +EE D
Sbjct: 173 DADEEEEEEEADEMEEEFDEEGEGDEEEEEED 204


>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 367

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 730 NRWHRSYGTXQSSLHRRQSCGT 665
           N +H SY   QS + R+ SC T
Sbjct: 101 NSFHNSYSRNQSPISRKSSCVT 122


>SPBC409.08 |||spermine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 539

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 18/87 (20%), Positives = 37/87 (42%)
 Frame = +1

Query: 106 QYVAKMXQQKELGMKCIKYMLLCITAIFVLTSALTISVGTTIYAIYHDISFFLSPYAFSP 285
           QY+AK+       +   + + +CI + F+ T  L  +  +    I+   +F  +P+ +  
Sbjct: 393 QYMAKLDANNGKSVPEWRLVGMCIASPFIPTGLLIFAWTSFPRLIWIGPAFSGAPFGYGM 452

Query: 286 AIFVIAIGVIMLFVSLFGCIGALKEST 366
            +F  +    ++ V    C  AL   T
Sbjct: 453 VLFYFSANNYLIDVYQNYCASALAAKT 479


>SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 412

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -2

Query: 261 EERDVMVDRVN-RSTHGDRQCRC*NKNRCYTQQHVFNALHPQLLLLXHFCNV 109
           ++  V V R +  S+H   +  C N +R  ++   +  +HP +++  H  N+
Sbjct: 49  DDTSVSVVRTSDSSSHCQNEIICLNTHRTISKYEAYGGIHPTIVIHEHQKNL 100


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1150

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 406  FILEIAAAITAYSLRSEVSQFLDKKLREALPLYY 507
            FI  + + ++  SLRS V +F  K+  + LP Y+
Sbjct: 974  FIQHLESEVSFNSLRSFVQEFEKKERLKNLPFYF 1007


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,271,216
Number of Sequences: 5004
Number of extensions: 65705
Number of successful extensions: 172
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)