Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_A03
(826 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81128-2|CAB03397.2| 232|Caenorhabditis elegans Hypothetical pr... 89 3e-18
Z69790-4|CAA93655.1| 282|Caenorhabditis elegans Hypothetical pr... 87 2e-17
Z68880-6|CAA93092.1| 308|Caenorhabditis elegans Hypothetical pr... 79 5e-15
AF039043-9|AAB94196.1| 427|Caenorhabditis elegans Tetraspanin f... 65 7e-11
AF039043-8|AAL02514.1| 451|Caenorhabditis elegans Tetraspanin f... 65 7e-11
Z78415-6|CAH60758.1| 291|Caenorhabditis elegans Hypothetical pr... 54 1e-07
Z67734-1|CAA91527.2| 279|Caenorhabditis elegans Hypothetical pr... 51 9e-07
U41028-2|AAA82355.1| 233|Caenorhabditis elegans Tetraspanin fam... 50 3e-06
Z73908-1|CAA98130.2| 230|Caenorhabditis elegans Hypothetical pr... 46 3e-05
AL021487-1|CAA16352.4| 241|Caenorhabditis elegans Hypothetical ... 42 5e-04
L14745-7|AAK71354.1| 234|Caenorhabditis elegans Tetraspanin fam... 40 0.002
U28740-6|AAA68322.4| 317|Caenorhabditis elegans Tetraspanin fam... 40 0.002
AL110487-3|CAB54426.1| 223|Caenorhabditis elegans Hypothetical ... 40 0.002
U67950-3|AAK84565.1| 138|Caenorhabditis elegans Hypothetical pr... 32 0.43
DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t... 32 0.43
AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t... 32 0.43
AF045640-7|AAU05589.1| 978|Caenorhabditis elegans Novel channel... 32 0.43
AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel... 32 0.43
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel... 32 0.43
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel... 32 0.43
Z69884-4|CAA93751.2| 913|Caenorhabditis elegans Hypothetical pr... 32 0.57
U50191-5|AAK31552.1| 247|Caenorhabditis elegans Tetraspanin fam... 31 0.76
Z81484-7|CAE11296.1| 221|Caenorhabditis elegans Hypothetical pr... 31 1.3
U39678-8|AAK39208.2| 228|Caenorhabditis elegans Hypothetical pr... 30 1.7
U88167-7|AAB42229.1| 378|Caenorhabditis elegans Hypothetical pr... 29 3.1
AL161712-18|CAC70140.1| 448|Caenorhabditis elegans Hypothetical... 29 4.0
Z29094-10|CAD45580.2| 965|Caenorhabditis elegans Hypothetical p... 29 5.3
Z29094-9|CAA82347.3| 960|Caenorhabditis elegans Hypothetical pr... 29 5.3
U88182-2|AAB42308.4| 961|Caenorhabditis elegans Patched related... 29 5.3
U42832-3|AAA83573.2| 361|Caenorhabditis elegans Tetraspanin fam... 29 5.3
AY450852-1|AAR18092.1| 960|Caenorhabditis elegans Tousled-like ... 29 5.3
Z50027-1|CAA90331.1| 583|Caenorhabditis elegans Hypothetical pr... 28 7.1
AC024824-3|AAK85501.1| 543|Caenorhabditis elegans Hypothetical ... 28 7.1
Z49125-4|CAA88936.1| 644|Caenorhabditis elegans Hypothetical pr... 28 9.3
U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel t... 28 9.3
DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-t... 28 9.3
AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-t... 28 9.3
>Z81128-2|CAB03397.2| 232|Caenorhabditis elegans Hypothetical
protein T23D8.2 protein.
Length = 232
Score = 89.4 bits (212), Expect = 3e-18
Identities = 55/229 (24%), Positives = 102/229 (44%)
Frame = +1
Query: 136 ELGMKCIKYMLLCITAIFVLTSALTISVGTTIYAIYHDISFFLSPYAFSPAIFVIAIGVI 315
E G+ +KY+L + + I VG+ + + ++ L + I ++ IG +
Sbjct: 3 EGGVTIVKYLLFLANLVLWVGGLSLIIVGSILQLKFDNVLDILGDERLATPILLLVIGSL 62
Query: 316 MLFVSLFGCIGALKESTCLVNIFAVILSIVFILEIAAAITAYSLRSEVSQFLDKKLREAL 495
+ GC GA++E+ CL FAV+L+++ EIAA I Y+L + +L+ +
Sbjct: 63 CTLLGFLGCCGAIRENYCLTVSFAVLLALLITCEIAAVIIGYALHDSFRLGIGNQLQTGM 122
Query: 496 PLYYQHAEAQDAFDFIQYELNCCGVDSYMDWHAVDPPTGGTGISFANLTVPDSCCAQSHM 675
Y++ + A+D CCGV + DW ++F T+PDSCC +
Sbjct: 123 VRYHESRGVESAWDKTHQLFECCGVTNSSDW-----------LTFT--TIPDSCCIEEIE 169
Query: 676 TVVGEETIVXCHKIYANGCLPRVYYLVNQSAGLLGAGALTICFIXIIGI 822
E ++ GC+ V V ++ ++G + I ++G+
Sbjct: 170 GCARENA-----PLFEPGCIHSVEQWVLKNGAMVGGICAVLAAIQLVGV 213
>Z69790-4|CAA93655.1| 282|Caenorhabditis elegans Hypothetical
protein F33C8.3 protein.
Length = 282
Score = 86.6 bits (205), Expect = 2e-17
Identities = 61/210 (29%), Positives = 94/210 (44%), Gaps = 32/210 (15%)
Frame = +1
Query: 292 FVIAIGVIMLFVSLFGCIGALKESTCLVNIFAVILSIVFILEIAAAITAYSLRSEVSQFL 471
F++ G I++ V FGCIGA K + C + F IL + F LE+AAA+T + + + ++
Sbjct: 59 FLVGAGAIIILVGYFGCIGAWKMNQCALAFFCCILILAFFLELAAAVTLFHKQEHIKHYV 118
Query: 472 DKKLREALPLYYQHAEA-QDAFDFIQYELNCCGVDSYMDWHA----VDPPT--------- 609
+ + + + Y A +DAFD +Q + CCGV +Y DW + +P T
Sbjct: 119 ESSMYDTIRNRYSSETAFKDAFDTVQEKFECCGVKTYTDWLSARWDAEPSTQLEVNEEDA 178
Query: 610 ----GGTGISFANL-----TVPDSCCAQ----SHMTVVGEETIVXCHKIYA-----NGCL 735
G G N VP SCC + S+ G YA GC
Sbjct: 179 GRIEHGIGAFGGNKGTGYGRVPSSCCNEHGKLSYPNNCGRSFSQAPLNTYAQFINTRGCA 238
Query: 736 PRVYYLVNQSAGLLGAGALTICFIXIIGIV 825
VY V+ S L+ + +C + ++GIV
Sbjct: 239 DAVYESVSSSLSLIVGVCVVLCIVQLLGIV 268
>Z68880-6|CAA93092.1| 308|Caenorhabditis elegans Hypothetical
protein T14G10.6 protein.
Length = 308
Score = 78.6 bits (185), Expect = 5e-15
Identities = 55/251 (21%), Positives = 103/251 (41%), Gaps = 27/251 (10%)
Frame = +1
Query: 151 CIKYMLLCITAIFVLTSALTISVGTTIYAIYHDISFFLSPYA---FSPAIFVIAIGVIML 321
C+KY + IF L + G + LS + P ++ +G +
Sbjct: 37 CVKYSVFSFNVIFFLLGFGLLLFGVWAQIEKNTFVNMLSKASKLYLDPTWPLLIVGFLTF 96
Query: 322 FVSLFGCIGALKESTCLVNIFAVILSIVFILEIAAAITAYSLRSEVSQFLDKKLREALPL 501
+ GC+G+L+E+T + ++ +L ++ I E +A + AY+ R ++ ++ L + +
Sbjct: 97 IIGFSGCVGSLRENTSFLTFYSTLLGLLLIAEFSAGVFAYACRDQLDNYIRNLLNDVVVG 156
Query: 502 YYQHAEAQDAFDFIQYELNCCGVDSYMDW-----------HAVDPPTGGTG----ISFAN 636
Y + Q D +Q CCG++ DW P GG I+ +
Sbjct: 157 YRDDPDLQLLIDSMQETWMCCGINGADDWDRNTYFSIEAREVASPEAGGVPFSCCINSSK 216
Query: 637 LTVPDSCCA-------QSHMT--VVGEETIVXCHKIYANGCLPRVYYLVNQSAGLLGAGA 789
L + C +SHM + + + IY GCLP++ +N + L+
Sbjct: 217 LEFKNYFCGHGVRLKPESHMAAHLAAQRVMAHTASIYTEGCLPKLQLWLNNNMLLVAVSM 276
Query: 790 LTICFIXIIGI 822
+ I I ++GI
Sbjct: 277 VIIAIIQVLGI 287
>AF039043-9|AAB94196.1| 427|Caenorhabditis elegans Tetraspanin
family protein 14,isoform a protein.
Length = 427
Score = 64.9 bits (151), Expect = 7e-11
Identities = 47/182 (25%), Positives = 85/182 (46%), Gaps = 9/182 (4%)
Frame = +1
Query: 151 CIKYMLLCITAIFVLTSALTISVGTTIYAIYHDI-SFFLSPYAFSPAIFVIAIGVIMLFV 327
C+K+++ + +I L +++G +Y D L +PAI + G + V
Sbjct: 29 CLKWLVFLLNSIVFLVGVGILALG--VYLFIKDFREVKLVDIILNPAILISIFGFSICVV 86
Query: 328 SLFGCIGALKESTCLVNIFAVILSIVFILEIAAAITAYSL-RSEVSQFLDKK--LREALP 498
S FG +GAL+++ L+ FA + + +IL +A + ++L ++ ++ L L A+
Sbjct: 87 SFFGFMGALRDNIFLLKCFAACVFLSYILVVAVTLVFFTLFYTDTTEGLSANWLLLYAVK 146
Query: 499 LYYQHAEAQDAFDFIQYELNCCGVDS----YMDWH-AVDPPTGGTGISFANLTVPDSCCA 663
Y+ + + D +Q L CCGV S Y DW+ + + VP SCC
Sbjct: 147 NYHTNRNLAEIMDALQENLECCGVSSIAQGYRDWNMSYQFNCTNSNPQPEKCGVPFSCCR 206
Query: 664 QS 669
+S
Sbjct: 207 KS 208
>AF039043-8|AAL02514.1| 451|Caenorhabditis elegans Tetraspanin
family protein 14,isoform b protein.
Length = 451
Score = 64.9 bits (151), Expect = 7e-11
Identities = 47/182 (25%), Positives = 85/182 (46%), Gaps = 9/182 (4%)
Frame = +1
Query: 151 CIKYMLLCITAIFVLTSALTISVGTTIYAIYHDI-SFFLSPYAFSPAIFVIAIGVIMLFV 327
C+K+++ + +I L +++G +Y D L +PAI + G + V
Sbjct: 53 CLKWLVFLLNSIVFLVGVGILALG--VYLFIKDFREVKLVDIILNPAILISIFGFSICVV 110
Query: 328 SLFGCIGALKESTCLVNIFAVILSIVFILEIAAAITAYSL-RSEVSQFLDKK--LREALP 498
S FG +GAL+++ L+ FA + + +IL +A + ++L ++ ++ L L A+
Sbjct: 111 SFFGFMGALRDNIFLLKCFAACVFLSYILVVAVTLVFFTLFYTDTTEGLSANWLLLYAVK 170
Query: 499 LYYQHAEAQDAFDFIQYELNCCGVDS----YMDWH-AVDPPTGGTGISFANLTVPDSCCA 663
Y+ + + D +Q L CCGV S Y DW+ + + VP SCC
Sbjct: 171 NYHTNRNLAEIMDALQENLECCGVSSIAQGYRDWNMSYQFNCTNSNPQPEKCGVPFSCCR 230
Query: 664 QS 669
+S
Sbjct: 231 KS 232
>Z78415-6|CAH60758.1| 291|Caenorhabditis elegans Hypothetical
protein C17G1.8 protein.
Length = 291
Score = 54.0 bits (124), Expect = 1e-07
Identities = 50/201 (24%), Positives = 83/201 (41%), Gaps = 16/201 (7%)
Frame = +1
Query: 187 FVLTSALTISVGTTIYAIYHD-ISFFLSPY-AFSPAIFVIAIGVIMLFVSLFGCIGALKE 360
F ++ ++ VG +Y+ ++ I + Y A S A + GV + + G +G
Sbjct: 14 FQISGLSSLIVGVWLYSSKNNFIELTPTSYSALSAAGLCVFTGVTIFIIVAVGYLGVSWS 73
Query: 361 STCLVNIFAVILSIVFILEIAAAITAYSLRSEVSQFLDKKLRE------ALPLYYQHAEA 522
+ L+ + + ++ ++ A IT + E + L K + + + +
Sbjct: 74 NKSLLYSYIGFVILLILVHGIARITGSLHKEEAKENLRKSMLHNINTTAVVTKIGREIKL 133
Query: 523 QDAFDFIQYELNCCGVDSYMDWH-AVDPPTGGTGISFANLTVPDSCCAQSHMTVVGEETI 699
+D +Q EL CCGVD+Y DWH +V P NL PDSCC H E
Sbjct: 134 SLTWDHLQRELQCCGVDNYTDWHYSVHWPN--------NLYTPDSCCDPQHFD--AENGT 183
Query: 700 VXCHK-------IYANGCLPR 741
C K +Y GC P+
Sbjct: 184 ENCGKLPDEQSLLYQKGCFPK 204
>Z67734-1|CAA91527.2| 279|Caenorhabditis elegans Hypothetical
protein B0198.1 protein.
Length = 279
Score = 51.2 bits (117), Expect = 9e-07
Identities = 42/202 (20%), Positives = 83/202 (41%), Gaps = 6/202 (2%)
Frame = +1
Query: 151 CIKYMLLCITAIFVLTSALTISVGTTIYAIYHDISFFLSPYAFSPAIFVIAIGVIMLFVS 330
C L I+ + V+ L +++ +Y D+ + + + I+ +A+G + V
Sbjct: 23 CCSKCQLFISYLLVIVGILFLALAIWLYIFRGDLIPLIQSHFYVKCIY-LAVGCGVFNVI 81
Query: 331 LFGCIGALKESTCLVNIFAVILSIVFILEIAAAITAYSLRSEVSQFLDKKL-REALPLYY 507
+ + + + C + + ++L I+E +S + Q L+ L + L Y
Sbjct: 82 IGFLVHSAVSNRCALVFYLLMLIFSMIMEGCLIYFTFSYHATYEQELNASLPNDILNNYN 141
Query: 508 QHAEAQDAFDFIQYELNCCGVDSYMDWHAVDP-----PTGGTGISFANLTVPDSCCAQSH 672
A +++Q + CCG +++ DW + P T + +PDSCC +H
Sbjct: 142 LDPNIAKAVNYLQRDSKCCGSNAFNDWPKPEVEDHYLPYAKTVVQRVQY-IPDSCCKSTH 200
Query: 673 MTVVGEETIVXCHKIYANGCLP 738
G + I+ GCLP
Sbjct: 201 QR-KGCALSDSPNNIFYRGCLP 221
>U41028-2|AAA82355.1| 233|Caenorhabditis elegans Tetraspanin family
protein 9 protein.
Length = 233
Score = 49.6 bits (113), Expect = 3e-06
Identities = 37/137 (27%), Positives = 62/137 (45%), Gaps = 1/137 (0%)
Frame = +1
Query: 295 VIAIGVIMLFVSLFGCIGALKESTCLVNIFAVILSIVFILEIAAAITAYSLRSEVSQFLD 474
++A+G ++ V FGC GA ES L+ +F I+ I+ +E+ A + A + R E +
Sbjct: 71 LVAVGALLFLVGFFGCCGAGCESPVLLGLFIFIIVILTAVELGATVFAMTNREEFVSSIQ 130
Query: 475 KKLREALPLYYQHAEAQDAFDFIQYELNCCGVDSYMDWHAVDPPTGGTGISFANLTVPDS 654
+ L+++ Y E + IQ CCG + + G L+ P +
Sbjct: 131 QVLKKSSATY----ELRKNIKPIQNVFQCCGATAQTQNRYIQDGLCGP----EPLSAPVN 182
Query: 655 CCAQ-SHMTVVGEETIV 702
C + SHM E+IV
Sbjct: 183 CFDRISHMVQSWGESIV 199
>Z73908-1|CAA98130.2| 230|Caenorhabditis elegans Hypothetical
protein F53B2.2 protein.
Length = 230
Score = 46.0 bits (104), Expect = 3e-05
Identities = 32/141 (22%), Positives = 66/141 (46%), Gaps = 7/141 (4%)
Frame = +1
Query: 187 FVLTSAL-TISVGTTIYAIYHDISFFLSPYAFSPAIFV-----IAIGVIMLFVSLFGCIG 348
F+L L + V T Y+I+ + F A + +V I IG M+ + L GC
Sbjct: 15 FILNLGLIVVGVMITWYSIWMILHQFEVTVARTSLFYVYRTISIMIGGCMVVLGLCGCFA 74
Query: 349 ALKESTCLVNIFAVILSIVFILEIAAAITAYSLRSEV-SQFLDKKLREALPLYYQHAEAQ 525
S +++ V++ +VF+++I A + + + + +F+ E + Y+ ++ +
Sbjct: 75 VCFGSKTALSVHLVLVFLVFVVKIVAIVMFLANKDHLRREFVGVYRDELVANYHNNSRTK 134
Query: 526 DAFDFIQYELNCCGVDSYMDW 588
+ D++ L CCG + D+
Sbjct: 135 NTLDWVHTSLKCCGANGCEDF 155
>AL021487-1|CAA16352.4| 241|Caenorhabditis elegans Hypothetical
protein Y45F10B.1 protein.
Length = 241
Score = 41.9 bits (94), Expect = 5e-04
Identities = 22/98 (22%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Frame = +1
Query: 298 IAIGVIMLFVSLFGCIGALKESTCLVNIFAVILSIVFILEIAAAITAYSLRSEV-SQFLD 474
I IG M+ + GC S +++ V++ IVF+++I A + + + +F+
Sbjct: 69 IMIGGCMVVLGFCGCFAVGFGSKTALSVHLVLVFIVFVVKIVAIVMFLANNDHLRREFVG 128
Query: 475 KKLREALPLYYQHAEAQDAFDFIQYELNCCGVDSYMDW 588
E + Y+ ++ ++ D++ L CCG + D+
Sbjct: 129 VYRDELVANYHNNSRTKNTLDWVHTSLKCCGANGCEDF 166
>L14745-7|AAK71354.1| 234|Caenorhabditis elegans Tetraspanin family
protein 2 protein.
Length = 234
Score = 40.3 bits (90), Expect = 0.002
Identities = 30/121 (24%), Positives = 54/121 (44%)
Frame = +1
Query: 247 DISFFLSPYAFSPAIFVIAIGVIMLFVSLFGCIGALKESTCLVNIFAVILSIVFILEIAA 426
D F + + +S + + +I +S+ G IGA+ + ++ V++ I FI+E+
Sbjct: 58 DDKFDMRSWIYSVYWSIYGLCIIAGPLSIIGLIGAISQKKPVLATCLVLIVIFFIMELGG 117
Query: 427 AITAYSLRSEVSQFLDKKLREALPLYYQHAEAQDAFDFIQYELNCCGVDSYMDWHAVDPP 606
+I +S R + L R A +Y ++ IQ NCCGV W + P
Sbjct: 118 SIALWSKRGSLRSLL---YRFANDIYLTNSVFD--ISIIQNTYNCCGVQD-GQWKCPNAP 171
Query: 607 T 609
+
Sbjct: 172 S 172
>U28740-6|AAA68322.4| 317|Caenorhabditis elegans Tetraspanin family
protein 11 protein.
Length = 317
Score = 39.9 bits (89), Expect = 0.002
Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 14/104 (13%)
Frame = +1
Query: 307 GVIMLFVSLFGCIGALKESTCLVNIFAVILSIVFILEIAAAITAYSLRSEV--SQFLDKK 480
G I++ V+ GC GA KE L+ ++ L ++ ++IAA I A+ L S + + F D
Sbjct: 90 GFIVIVVAFLGCCGAAKEWRPLLCCYSSCLMLILAIQIAATIYAF-LHSHMFENDFRD-I 147
Query: 481 LREALPLY------YQHAEAQD------AFDFIQYELNCCGVDS 576
L +L +Y QD A+D I E +CCGVDS
Sbjct: 148 LHSSLKMYNGTDNMKVSNNPQDGLLVKTAWDKIMIEKSCCGVDS 191
>AL110487-3|CAB54426.1| 223|Caenorhabditis elegans Hypothetical
protein Y39E4B.4 protein.
Length = 223
Score = 39.9 bits (89), Expect = 0.002
Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Frame = +1
Query: 295 VIAIGVIMLFVSLFGCIGALKESTCLVNIFAVILSIVFILEIAAAITAYSLRSEVSQFLD 474
+I + + + G IGA+ S L+ + + + I+F+LEIA IT R V + +
Sbjct: 74 IIGFAIANVIIGFVGVIGAVIRSKYLLAPYFLFMVILFLLEIAIGITVLVKRRSVRRTVK 133
Query: 475 KKLREALPLYYQHAEAQ-DAFDFIQYELNCCGVDS 576
+ + ++ + +A+A AF+F NCCG ++
Sbjct: 134 EYVFDS---FNMNAQADISAFNF---RYNCCGAEN 162
>U67950-3|AAK84565.1| 138|Caenorhabditis elegans Hypothetical
protein T01B6.4 protein.
Length = 138
Score = 32.3 bits (70), Expect = 0.43
Identities = 17/35 (48%), Positives = 18/35 (51%)
Frame = -2
Query: 672 VGLGAARIGDREVGKANAGPSSGGVDRMPVHVAID 568
VG RIG R VG N PSS V +PV V D
Sbjct: 100 VGRYGFRIGKRFVGDQNDSPSSSAVQMLPVQVMYD 134
>DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1797
Score = 32.3 bits (70), Expect = 0.43
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 580 MDWHAVDPPTGGTGISFANLTVPDSCCA 663
MD+H V P T ++ +L +PD+ CA
Sbjct: 221 MDYHCVQPKTDPNNVTIMDLAIPDTMCA 248
>AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1831
Score = 32.3 bits (70), Expect = 0.43
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 580 MDWHAVDPPTGGTGISFANLTVPDSCCA 663
MD+H V P T ++ +L +PD+ CA
Sbjct: 221 MDYHCVQPKTDPNNVTIMDLAIPDTMCA 248
>AF045640-7|AAU05589.1| 978|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
b protein.
Length = 978
Score = 32.3 bits (70), Expect = 0.43
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 580 MDWHAVDPPTGGTGISFANLTVPDSCCA 663
MD+H V P T ++ +L +PD+ CA
Sbjct: 279 MDYHCVQPKTDPNNVTIMDLAIPDTMCA 306
>AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
a protein.
Length = 1562
Score = 32.3 bits (70), Expect = 0.43
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 580 MDWHAVDPPTGGTGISFANLTVPDSCCA 663
MD+H V P T ++ +L +PD+ CA
Sbjct: 279 MDYHCVQPKTDPNNVTIMDLAIPDTMCA 306
>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
c protein.
Length = 1913
Score = 32.3 bits (70), Expect = 0.43
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 580 MDWHAVDPPTGGTGISFANLTVPDSCCA 663
MD+H V P T ++ +L +PD+ CA
Sbjct: 279 MDYHCVQPKTDPNNVTIMDLAIPDTMCA 306
>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
d protein.
Length = 1861
Score = 32.3 bits (70), Expect = 0.43
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 580 MDWHAVDPPTGGTGISFANLTVPDSCCA 663
MD+H V P T ++ +L +PD+ CA
Sbjct: 251 MDYHCVQPKTDPNNVTIMDLAIPDTMCA 278
>Z69884-4|CAA93751.2| 913|Caenorhabditis elegans Hypothetical
protein F31F6.5 protein.
Length = 913
Score = 31.9 bits (69), Expect = 0.57
Identities = 17/61 (27%), Positives = 36/61 (59%)
Frame = +1
Query: 250 ISFFLSPYAFSPAIFVIAIGVIMLFVSLFGCIGALKESTCLVNIFAVILSIVFILEIAAA 429
+SF L P P+ FVI + ++ + + +FG + + V++ ++I+SI F ++++A
Sbjct: 764 VSFLLVPSL--PSGFVIFVSIVSINIGVFGYMTLWGVNLDAVSMISIIMSIGFAVDLSAH 821
Query: 430 I 432
I
Sbjct: 822 I 822
>U50191-5|AAK31552.1| 247|Caenorhabditis elegans Tetraspanin family
protein 10 protein.
Length = 247
Score = 31.5 bits (68), Expect = 0.76
Identities = 22/116 (18%), Positives = 55/116 (47%), Gaps = 11/116 (9%)
Frame = +1
Query: 298 IAIGVIMLFVSLFGCIGALKESTCLVNIFAVILSIVFILEIAAAITAYSLRSEVSQ---- 465
+A +++ L + L+ ++ L+ + +++++ ++++ + A++ +V+Q
Sbjct: 65 VAAACVLVISFLVATVSVLRHNSFLLKAYCAMVALMIVVQLVDGLLAFTYSDQVNQLASD 124
Query: 466 -FLDKKLREAL-----PLYYQHAEAQDAFDFIQYEL-NCCGVDSYMDWHAVDPPTG 612
F+ + L +A P+ ++A+ F +L CCGV + DW TG
Sbjct: 125 DFMYESLSKAAQKTIPPIGSLSSDAEVQFWANTQDLFGCCGVYNSTDWSVFWGVTG 180
>Z81484-7|CAE11296.1| 221|Caenorhabditis elegans Hypothetical
protein C47A10.7 protein.
Length = 221
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/31 (54%), Positives = 20/31 (64%)
Frame = +1
Query: 250 ISFFLSPYAFSPAIFVIAIGVIMLFVSLFGC 342
+S SPY +S +FVIA VI L V LFGC
Sbjct: 3 LSALSSPYIYSNVLFVIA--VISLPVHLFGC 31
>U39678-8|AAK39208.2| 228|Caenorhabditis elegans Hypothetical
protein C39D10.6 protein.
Length = 228
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Frame = +1
Query: 193 LTSALTISV-GTTIYAIYHDISFFLSPYAFSPAIFVIAIGVIMLFVSLFG-CIGA 351
+++A +I + G+ ++ ++ + +L PY F I IAI +I+LF+ L +GA
Sbjct: 78 MSTAFSIVIFGSLLFGVWKEKRLYLYPYLFFQVI-SIAISIIVLFIFLISIAVGA 131
>U88167-7|AAB42229.1| 378|Caenorhabditis elegans Hypothetical
protein D2092.2 protein.
Length = 378
Score = 29.5 bits (63), Expect = 3.1
Identities = 17/50 (34%), Positives = 29/50 (58%)
Frame = +2
Query: 596 STPPLEGPALALPTSRSPIRAAPSPT*LSSVKRRLXSAIRSMPTVACPES 745
ST + P+ LPT+RSPI +PS + +S + S+ ++ V+ P+S
Sbjct: 280 STASPDPPSFVLPTARSPINTSPSSSPKASSPK--ASSPKAASPVSSPKS 327
>AL161712-18|CAC70140.1| 448|Caenorhabditis elegans Hypothetical
protein Y66D12A.23 protein.
Length = 448
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +1
Query: 562 CGVDSYMDWHAV-DPPTGGTGISFANL 639
CG+D Y++ PPTGG GI F +
Sbjct: 367 CGIDWYLEMRRRGQPPTGGFGIGFERM 393
>Z29094-10|CAD45580.2| 965|Caenorhabditis elegans Hypothetical
protein C07A9.3b protein.
Length = 965
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +1
Query: 640 TVPDSCCAQSHMTVVGEETIVXCHKIYANGCLPRVYYLVNQSAGLLGA 783
TV S + +H +VGE + A G RV + S+G+LGA
Sbjct: 42 TVQSSGSSSNHAPIVGESPLGTVSSTMATGDTGRVGNVTYMSSGMLGA 89
>Z29094-9|CAA82347.3| 960|Caenorhabditis elegans Hypothetical
protein C07A9.3a protein.
Length = 960
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +1
Query: 640 TVPDSCCAQSHMTVVGEETIVXCHKIYANGCLPRVYYLVNQSAGLLGA 783
TV S + +H +VGE + A G RV + S+G+LGA
Sbjct: 42 TVQSSGSSSNHAPIVGESPLGTVSSTMATGDTGRVGNVTYMSSGMLGA 89
>U88182-2|AAB42308.4| 961|Caenorhabditis elegans Patched related
family protein 5 protein.
Length = 961
Score = 28.7 bits (61), Expect = 5.3
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
Frame = +1
Query: 274 AFSPAIFVIAIGVIMLFVSLFGC------IGALKESTCLVNIFAVILS 399
++SP++FV AI +++ F L G + AL ES N + V LS
Sbjct: 882 SYSPSVFVAAIFLVVTFGMLHGLLILPTFLAALPESVTTANCYRVFLS 929
>U42832-3|AAA83573.2| 361|Caenorhabditis elegans Tetraspanin family
protein 16 protein.
Length = 361
Score = 28.7 bits (61), Expect = 5.3
Identities = 44/186 (23%), Positives = 82/186 (44%), Gaps = 14/186 (7%)
Frame = +1
Query: 148 KCIKYMLLCITAIFVLTSALTISVGTTIYAIYHDISFFLSPYAFSPAIF----VIAIGV- 312
+C+K L + ++ + + I VG I + ++SF S + ++ +I +G+
Sbjct: 89 QCLKKCLALLLSVLTMIGSGFI-VGFGIQTL-REVSFTASVIGTNLIVYCPYLLILVGIL 146
Query: 313 --IMLFVSLFGCIGALKESTCLV-NIFAVILSIVFILEIAA--AITAYSLRSEVSQF-LD 474
+M V F I L ++ ++ ++FA I F I A AI Y L S VS ++
Sbjct: 147 SFVMTPVRFFSII--LNDNKIMITHMFATI----FFATICAMTAILGYDLNSHVSSSDME 200
Query: 475 KKLREALPLYYQHAEA---QDAFDFIQYELNCCGVDSYMDWHAVDPPTGGTGISFANLTV 645
++ ++ Y + A + ++ + CCGV + D+ V+ +
Sbjct: 201 HWMKHSIKEDYGNPTAPHIMEEWNKAHRQFKCCGVRNLTDF--VESKWYIMQKKHPRQRI 258
Query: 646 PDSCCA 663
PDSCCA
Sbjct: 259 PDSCCA 264
>AY450852-1|AAR18092.1| 960|Caenorhabditis elegans Tousled-like
kinase protein.
Length = 960
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +1
Query: 640 TVPDSCCAQSHMTVVGEETIVXCHKIYANGCLPRVYYLVNQSAGLLGA 783
TV S + +H +VGE + A G RV + S+G+LGA
Sbjct: 42 TVQSSGSSSNHAPIVGESPLGTVSSTMATGDTGRVGNVTYMSSGMLGA 89
>Z50027-1|CAA90331.1| 583|Caenorhabditis elegans Hypothetical
protein C39B10.1 protein.
Length = 583
Score = 28.3 bits (60), Expect = 7.1
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = +1
Query: 139 LGMKC---IKYMLLCITAIFVLTSALTISVGTTIYAIYHDISFFLSPYA 276
LGM C I Y+L C++ + +L SV T IY + I FFL P+A
Sbjct: 83 LGMICFWDIIYLLCCLSTYCI--PSLIYSV-TPIYGPFSYILFFLQPFA 128
>AC024824-3|AAK85501.1| 543|Caenorhabditis elegans Hypothetical
protein Y55B1BR.1 protein.
Length = 543
Score = 28.3 bits (60), Expect = 7.1
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = -3
Query: 692 SSPTTVMWDWAQHESGTVRLAKLMPVPPVGGSTACQS-M*LSTPQQF-NSY*MKSNASCA 519
+SP++ W+W + E + L P V +T+ +S L TP+ N + N SC+
Sbjct: 27 TSPSSDRWNWMEDEKSSYESLSLTPFSSVSPNTSKKSATGLETPKSAGNLHSQDRNLSCS 86
>Z49125-4|CAA88936.1| 644|Caenorhabditis elegans Hypothetical
protein C47G2.4 protein.
Length = 644
Score = 27.9 bits (59), Expect = 9.3
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +1
Query: 211 ISVGTTIYAIYHDISFFLSPYAFSPAIFV 297
++V T + ++ + +FF+ Y SPA FV
Sbjct: 372 VTVFMTFFVLFSECTFFVVSYTLSPAAFV 400
>U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 2 protein.
Length = 1785
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +1
Query: 532 FDFIQYELNCCGVDSY--MDWHAVDPPTGGTGISFANLTVPDSCCAQ 666
F F + GV + +++H V T ++ A+L +PD+ C+Q
Sbjct: 227 FMFFVFSYAIMGVQLFGRLNYHCVVNGTDPNNVTIADLAIPDTMCSQ 273
>DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1763
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +1
Query: 532 FDFIQYELNCCGVDSY--MDWHAVDPPTGGTGISFANLTVPDSCCAQ 666
F F + GV + +++H V T ++ A+L +PD+ C+Q
Sbjct: 205 FMFFVFSYAIMGVQLFGRLNYHCVVNGTDPNNVTIADLAIPDTMCSQ 251
>AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1785
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +1
Query: 532 FDFIQYELNCCGVDSY--MDWHAVDPPTGGTGISFANLTVPDSCCAQ 666
F F + GV + +++H V T ++ A+L +PD+ C+Q
Sbjct: 227 FMFFVFSYAIMGVQLFGRLNYHCVVNGTDPNNVTIADLAIPDTMCSQ 273
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,672,067
Number of Sequences: 27780
Number of extensions: 400162
Number of successful extensions: 1173
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 1113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1165
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2040452812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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