Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_A02
(710 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch... 237 1e-63
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces... 126 3e-30
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma... 120 3e-28
SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces pomb... 108 7e-25
SPAC926.03 |rlc1||myosin II regulatory light chain |Schizosaccha... 86 5e-18
SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyce... 77 2e-15
SPAC1687.14c |||EF hand family protein, unknown role|Schizosacch... 45 1e-05
SPAC18B11.04 |ncs1||related to neuronal calcium sensor Ncs1|Schi... 43 5e-05
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma... 36 0.006
SPBC11G11.02c |end3||actin cortical patch component End3 |Schizo... 35 0.013
SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces ... 30 0.38
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha... 29 0.87
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 28 1.1
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa... 27 2.0
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 27 2.6
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po... 27 2.6
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 27 3.5
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ... 27 3.5
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 27 3.5
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ... 25 8.1
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 25 8.1
>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 150
Score = 237 bits (580), Expect = 1e-63
Identities = 110/145 (75%), Positives = 129/145 (88%)
Frame = +1
Query: 118 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTXAELQDMINEVDADGNGTI 297
LT+EQIAEF+EAFSLFD+D DG IT+ ELG VMRSLGQ+PT AELQDMINEVDADGNGTI
Sbjct: 6 LTDEQIAEFREAFSLFDRDQDGNITSNELGVVMRSLGQSPTAAELQDMINEVDADGNGTI 65
Query: 298 DFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAXLRHVMTNLGEKLTDEEVDE 477
DF EFLTMMARKMKDTD+EEE+REAF+VFDKDGNG+I+ L HV+T+LGE+L+ EEV +
Sbjct: 66 DFTEFLTMMARKMKDTDNEEEVREAFKVFDKDGNGYITVEELTHVLTSLGERLSQEEVAD 125
Query: 478 MIREADIDGDGQVNYEEFVTMMTSK 552
MIREAD DGDG +NYEEF +++SK
Sbjct: 126 MIREADTDGDGVINYEEFSRVISSK 150
>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 143
Score = 126 bits (304), Expect = 3e-30
Identities = 65/144 (45%), Positives = 92/144 (63%)
Frame = +1
Query: 121 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTXAELQDMINEVDADGNGTID 300
++EQ E KEAF L+D D DG I T +G+V+RSLG N T AEL + NE+ ID
Sbjct: 4 SKEQTDEMKEAFVLYDIDKDGLIPTSHVGSVLRSLGINVTDAELAKLSNEL----GDAID 59
Query: 301 FPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAXLRHVMTNLGEKLTDEEVDEM 480
+F++ ++ K+++T+SEEE +AFRVFDKD +G+I A M LGEKL+D EV M
Sbjct: 60 EKKFMSFVSNKLRETESEEEYIKAFRVFDKDNSGYIETAKFADYMKTLGEKLSDNEVQLM 119
Query: 481 IREADIDGDGQVNYEEFVTMMTSK 552
++EAD G +Y +FV + +K
Sbjct: 120 VQEADPTNSGSFDYYDFVQRIMAK 143
>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 176
Score = 120 bits (288), Expect = 3e-28
Identities = 57/143 (39%), Positives = 84/143 (58%)
Frame = +1
Query: 115 QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTXAELQDMINEVDADGNGT 294
++TEEQ + EAF LFD D D I EL MR+LG N +E+ ++ + D G G
Sbjct: 30 EITEEQRQDINEAFKLFDSDKDNAIDYHELRAAMRALGFNAEKSEVLKILRDFDKTGKGY 89
Query: 295 IDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAXLRHVMTNLGEKLTDEEVD 474
+ +F+ +M K+ + D EEI+ AF +FD D G IS LR V L E + D+E++
Sbjct: 90 LQMEDFVRVMTEKIVERDPLEEIKRAFELFDDDETGKISLRNLRRVAKELNENIDDQELE 149
Query: 475 EMIREADIDGDGQVNYEEFVTMM 543
MI E D+D DG++N +EF+ +M
Sbjct: 150 AMIEEFDLDQDGEINEQEFIAIM 172
Score = 49.6 bits (113), Expect = 4e-07
Identities = 25/69 (36%), Positives = 38/69 (55%)
Frame = +1
Query: 346 DSEEEIREAFRVFDKDGNGFISAAXLRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE 525
+ ++I EAF++FD D + I LR M LG EV +++R+ D G G + E
Sbjct: 34 EQRQDINEAFKLFDSDKDNAIDYHELRAAMRALGFNAEKSEVLKILRDFDKTGKGYLQME 93
Query: 526 EFVTMMTSK 552
+FV +MT K
Sbjct: 94 DFVRVMTEK 102
>SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 141
Score = 108 bits (260), Expect = 7e-25
Identities = 56/136 (41%), Positives = 88/136 (64%), Gaps = 2/136 (1%)
Frame = +1
Query: 142 FKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTXAELQDMINEVDADGNGTIDFPEFLTM 321
+K+AFSLFD+ G G I +G ++R+ GQNPT AE+ ++ + + A+ +D +FL +
Sbjct: 8 YKQAFSLFDRHGTGRIPKTSIGDLLRACGQNPTLAEITEIESTLPAE----VDMEQFLQV 63
Query: 322 MARKMK-DTDSE-EEIREAFRVFDKDGNGFISAAXLRHVMTNLGEKLTDEEVDEMIREAD 495
+ R D + EE + F+VFDKD G I LR+V+T+LGEKL++EE+DE+++
Sbjct: 64 LNRPNGFDMPGDPEEFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGVP 123
Query: 496 IDGDGQVNYEEFVTMM 543
+ DG VNY +FV M+
Sbjct: 124 VK-DGMVNYHDFVQMI 138
Score = 41.5 bits (93), Expect = 1e-04
Identities = 20/62 (32%), Positives = 36/62 (58%)
Frame = +1
Query: 139 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTXAELQDMINEVDADGNGTIDFPEFLT 318
EF + F +FDKD G I EL V+ SLG+ + E+ +++ V +G +++ +F+
Sbjct: 78 EFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGVPVK-DGMVNYHDFVQ 136
Query: 319 MM 324
M+
Sbjct: 137 MI 138
>SPAC926.03 |rlc1||myosin II regulatory light chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 184
Score = 85.8 bits (203), Expect = 5e-18
Identities = 48/140 (34%), Positives = 77/140 (55%)
Frame = +1
Query: 115 QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTXAELQDMINEVDADGNGT 294
QLT QI E KEAF+L DKDGDG I +++ T++ SL Q+ + +D IN + N
Sbjct: 41 QLTSSQIQELKEAFALLDKDGDGNIGREDVKTMLTSLNQDAS----EDSINHMFESINPP 96
Query: 295 IDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAXLRHVMTNLGEKLTDEEVD 474
I+ FLT M + ++ EAF FD +G I + +R ++++G+++ +EV+
Sbjct: 97 INLAAFLTAMGSMLCRISPRNDLLEAFSTFDDTQSGKIPISTMRDALSSMGDRMDPQEVE 156
Query: 475 EMIREADIDGDGQVNYEEFV 534
++R G YE+FV
Sbjct: 157 SILR--SYTSHGVFYYEKFV 174
Score = 28.3 bits (60), Expect = 1.1
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Frame = +1
Query: 406 ISAAXLRHVMTNLGEKLTDEEVDEMIREA----DIDGDGQVNYEEFVTMMTS 549
++A + + +LT ++ E+ +EA D DGDG + E+ TM+TS
Sbjct: 26 VAAQAAKRASSGAFAQLTSSQIQEL-KEAFALLDKDGDGNIGREDVKTMLTS 76
>SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 174
Score = 77.0 bits (181), Expect = 2e-15
Identities = 46/142 (32%), Positives = 77/142 (54%), Gaps = 5/142 (3%)
Frame = +1
Query: 121 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTXAELQDMINEVDADGNGTID 300
+ E+I ++ F D + G+I E ++ S+ NP + L + VD DG G +D
Sbjct: 19 SNEEIERIRKRFIKIDANQSGSIDRNEFLSIP-SVASNPLASRL---FSVVDEDGGGDVD 74
Query: 301 FPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAXLRHVM-----TNLGEKLTDE 465
F EF+ ++ + EE+++ AF+++D D +G+IS L V+ TNL E +
Sbjct: 75 FQEFINSLSVFSVHGNKEEKLKFAFKIYDIDRDGYISNGELYLVLKMMVGTNLREDQLQQ 134
Query: 466 EVDEMIREADIDGDGQVNYEEF 531
VD+ I E D D DG++++EEF
Sbjct: 135 IVDKTIMEVDKDRDGKISFEEF 156
Score = 28.3 bits (60), Expect = 1.1
Identities = 28/114 (24%), Positives = 48/114 (42%), Gaps = 3/114 (2%)
Frame = +1
Query: 211 VMRSLGQNPTXAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDK 390
+ S N ++ ++DA+ +G+ID EFL+ + S F V D+
Sbjct: 13 ISNSSFSNEEIERIRKRFIKIDANQSGSIDRNEFLS-----IPSVASNPLASRLFSVVDE 67
Query: 391 DGNG---FISAAXLRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMM 543
DG G F V + G K +E++ + DID DG ++ E ++
Sbjct: 68 DGGGDVDFQEFINSLSVFSVHGNK--EEKLKFAFKIYDIDRDGYISNGELYLVL 119
>SPAC1687.14c |||EF hand family protein, unknown
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 76
Score = 44.8 bits (101), Expect = 1e-05
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Frame = +1
Query: 322 MARKMKDTDSEEEIREAFRVFDKDGNGFISAAXLRHVMTNLGEKLTDEEVDEMIREADID 501
M+ K + +EE EAF +FD G+I LR LGE LT E++ M+ D+
Sbjct: 1 MSVSTKRLEMDEEAEEAFDLFDVTHKGYIDFEDLRRSCAQLGENLTKEQLQLML---DLA 57
Query: 502 G-DGQVNYEEFVTM 540
G +G+V+ EEF +
Sbjct: 58 GTNGKVSREEFAEL 71
Score = 33.9 bits (74), Expect = 0.023
Identities = 23/62 (37%), Positives = 31/62 (50%)
Frame = +1
Query: 127 EQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTXAELQDMINEVDADGNGTIDFP 306
E E +EAF LFD G I ++L LG+N T +LQ M++ A NG +
Sbjct: 9 EMDEEAEEAFDLFDVTHKGYIDFEDLRRSCAQLGENLTKEQLQLMLDL--AGTNGKVSRE 66
Query: 307 EF 312
EF
Sbjct: 67 EF 68
>SPAC18B11.04 |ncs1||related to neuronal calcium sensor
Ncs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 42.7 bits (96), Expect = 5e-05
Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 12/103 (11%)
Frame = +1
Query: 259 MINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAXLRHV-- 432
+ N DAD NG IDF EF+ ++ + + +++ AF+++D D NG IS + +
Sbjct: 68 VFNVFDADKNGYIDFKEFICALSVTSRG-ELNDKLIWAFQLYDLDNNGLISYDEMLRIVD 126
Query: 433 ----MTNLGEKLTDEE------VDEMIREADIDGDGQVNYEEF 531
M KL ++E V+++ D + DGQ+ EEF
Sbjct: 127 AIYKMVGSMVKLPEDEDTPEKRVNKIFNMMDKNKDGQLTLEEF 169
Score = 28.7 bits (61), Expect = 0.87
Identities = 17/86 (19%), Positives = 38/86 (44%)
Frame = +1
Query: 286 NGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAXLRHVMTNLGEKLTDE 465
+G ++ EF + + D F VFD D NG+I ++ ++
Sbjct: 40 SGHLNKSEFQKIYKQFFPFGDPSAFAEYVFNVFDADKNGYIDFKEFICALSVTSRGELND 99
Query: 466 EVDEMIREADIDGDGQVNYEEFVTMM 543
++ + D+D +G ++Y+E + ++
Sbjct: 100 KLIWAFQLYDLDNNGLISYDEMLRIV 125
>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 614
Score = 35.9 bits (79), Expect = 0.006
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Frame = +1
Query: 322 MARKMKDTDSEE--EIREAFRVFDKDGNGFISAAXLRHVMTNLGEKLTDEEVDEMIREAD 495
+ +K + +EE + + F D DG G++ + +K + +EV E IRE +
Sbjct: 6 LQKKYPELTNEEILTLTDQFNKLDVDGKGYLDQPTTIKAFED-SKKGSYDEVREAIREVN 64
Query: 496 IDGDGQVNYEEFV 534
+D G+V E+FV
Sbjct: 65 VDSSGRVEPEDFV 77
Score = 35.9 bits (79), Expect = 0.006
Identities = 20/57 (35%), Positives = 29/57 (50%)
Frame = +1
Query: 232 NPTXAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNG 402
N L D N++D DG G +D P T+ A + S +E+REA R + D +G
Sbjct: 15 NEEILTLTDQFNKLDVDGKGYLDQP--TTIKAFEDSKKGSYDEVREAIREVNVDSSG 69
>SPBC11G11.02c |end3||actin cortical patch component End3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 375
Score = 34.7 bits (76), Expect = 0.013
Identities = 19/68 (27%), Positives = 38/68 (55%)
Frame = +1
Query: 340 DTDSEEEIREAFRVFDKDGNGFISAAXLRHVMTNLGEKLTDEEVDEMIREADIDGDGQVN 519
D + + E FR + + NG++S + V+ + KL+ ++++++ ADID DG +
Sbjct: 2 DPQEKNKYWEIFRGLNPE-NGYLSGSKAAGVLRS--SKLSSDKLEKIWDLADIDDDGMFD 58
Query: 520 YEEFVTMM 543
++EF M
Sbjct: 59 FDEFAIAM 66
>SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 557
Score = 29.9 bits (64), Expect = 0.38
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = -3
Query: 507 VAVDIGLANHLVDLLVSEFLSEVGHDVAQXGRGDEAVAVLVEDAE 373
V++ I L ++ L+ FLSE + G+ DEA+ V+ ++AE
Sbjct: 180 VSIGINLLWGIITLVGVSFLSESPRYLVSIGKDDEAIQVMCKNAE 224
>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1011
Score = 28.7 bits (61), Expect = 0.87
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Frame = +1
Query: 112 DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQ-----NPTXAELQDMINEVD 276
D+ E A + +S+FD+D +G IT +E+ +G+ + + +L D I+++D
Sbjct: 538 DETGEVDNATLEACYSIFDRDLNGDITCEEIELACVEIGKERKSISASLRDLNDSISKLD 597
>SPAC694.06c |mrc1||mediator of replication checkpoint 1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1019
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +1
Query: 262 INEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDK 390
I+E D + NG + F + + +KD+ EE+ ++F + D+
Sbjct: 545 ISESDDESNGDMIRDSFDRLSSESIKDSQKTEELHDSFGINDE 587
>SPBC418.02 |||NatA N-acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 27.5 bits (58), Expect = 2.0
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -3
Query: 639 SNTMLILCVMKQNVYLNXLLFTHTXAGGSLRRHHGDE 529
S T+L + +M QN +LN F H A + R+ + +E
Sbjct: 199 SQTVLEILLMNQNSFLNNFNFEHIKADFAFRQKNYEE 235
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 27.1 bits (57), Expect = 2.6
Identities = 19/85 (22%), Positives = 31/85 (36%)
Frame = +1
Query: 148 EAFSLFDKDGDGTITTKELGTVMRSLGQNPTXAELQDMINEVDADGNGTIDFPEFLTMMA 327
+ F FD+D DG + +EL + R P N + +G + + +L +
Sbjct: 311 DLFYQFDRDNDGALNNEELSALFRHTPGLPEIWVSSQFPNSTVLNEHGYVTYNGWLAQWS 370
Query: 328 RKMKDTDSEEEIREAFRVFDKDGNG 402
A+ FD DG G
Sbjct: 371 MITLFDYKTTLAYLAYLGFDTDGRG 395
>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 430 VMTNLGEKLTDEEVDEMIREADIDGDGQVNYEE 528
V + E+ +EE DEM E D +G+G EE
Sbjct: 170 VQPDADEEEEEEEADEMEEEFDEEGEGDEEEEE 202
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 26.6 bits (56), Expect = 3.5
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 8/46 (17%)
Frame = +1
Query: 382 FDKDGNGFISAAXLRH--------VMTNLGEKLTDEEVDEMIREAD 495
FD D NG ++ + L +TN +L+ EE+D M+ EA+
Sbjct: 476 FDVDANGILNVSALEKGTGKTQKITITNDKGRLSKEEIDRMVSEAE 521
>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
zf-fungal binuclear cluster type |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 977
Score = 26.6 bits (56), Expect = 3.5
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -2
Query: 256 LEVRLXWGSVLATSSRCPALWS*WCHR 176
LE++ WGS+ A + +W+ W R
Sbjct: 850 LEMKNYWGSISALCDKMSEIWADWVQR 876
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 26.6 bits (56), Expect = 3.5
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 8/46 (17%)
Frame = +1
Query: 382 FDKDGNGFISAAXLRH--------VMTNLGEKLTDEEVDEMIREAD 495
FD D NG ++ + L +TN +L+ EE+D M+ EA+
Sbjct: 476 FDVDANGILNVSALEKGTGKTQKITITNDKGRLSKEEIDRMVAEAE 521
>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 25.4 bits (53), Expect = 8.1
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -3
Query: 519 IDLAVAVDIGLANHLVDLLVSEFLSEVGHDVAQ 421
+D++V +D+ +H L S LS HDV Q
Sbjct: 28 VDVSVDIDVIFPDHTQTLSFSLLLSNTIHDVRQ 60
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 25.4 bits (53), Expect = 8.1
Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +1
Query: 184 TITTKELGTVMRSLGQ-NPTXAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEE 360
T + GT+ S+G E + ++++ T DFPE L+ +++ EE
Sbjct: 545 TTSLHPFGTLYESIGTIGDPKVEYKAILHDFSCH---TYDFPESLSHCVKRLPTPIPAEE 601
Query: 361 IREAFRVFDK 390
+++ + + DK
Sbjct: 602 LQKRYNLRDK 611
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,139,428
Number of Sequences: 5004
Number of extensions: 36344
Number of successful extensions: 159
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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