Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_P24
         (644 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006712-2|AAK39324.1|  754|Caenorhabditis elegans Hypothetical ...    30   1.2  
U56963-4|AAB38117.2|  316|Caenorhabditis elegans Serpentine rece...    28   6.5  

>AC006712-2|AAK39324.1|  754|Caenorhabditis elegans Hypothetical
           protein Y119C1B.5 protein.
          Length = 754

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/51 (27%), Positives = 28/51 (54%)
 Frame = +3

Query: 357 LTLCLYVLISVFITCIYKVHSYVIMYF*YKPTSSFIDGSYC*CIFSITVLL 509
           L L LY++IS  +  ++++   V++     PT+S    + C CI  + V++
Sbjct: 409 LALVLYIVISALLQSLFEIIEVVLLNLPSSPTASRARHARCICIALLLVVI 459


>U56963-4|AAB38117.2|  316|Caenorhabditis elegans Serpentine
           receptor, class v protein29 protein.
          Length = 316

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = +3

Query: 369 LYVLISVFITCIYKVHSYVIMYF*YKPTSSFIDGS 473
           L  LI+V ITC+  V SYVIM+   +  S+ I  S
Sbjct: 178 LMALITVAITCLICVASYVIMWITLRKHSAGITKS 212


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,899,924
Number of Sequences: 27780
Number of extensions: 282580
Number of successful extensions: 542
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)