Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_P23
         (494 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q3V5H3 Cluster: Putative uncharacterized protein; n=2; ...    33   2.7  
UniRef50_Q10IL3 Cluster: Retrotransposon protein, putative, Ty3-...    33   3.5  
UniRef50_Q95WA7 Cluster: Circadian clock protein period; n=1; Bu...    33   3.5  
UniRef50_Q4STW6 Cluster: Chromosome undetermined SCAF14091, whol...    33   4.6  
UniRef50_Q96JK2 Cluster: WD repeat-containing protein 22; n=27; ...    33   4.6  
UniRef50_A2VPI0 Cluster: Nucleoside hydrolase iunH; n=7; Mycobac...    32   6.1  

>UniRef50_Q3V5H3 Cluster: Putative uncharacterized protein; n=2;
           Caenorhabditis elegans|Rep: Putative uncharacterized
           protein - Caenorhabditis elegans
          Length = 759

 Score = 33.5 bits (73), Expect = 2.7
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -1

Query: 212 EAGRVRRR*MSDERYLXYNLRRVDTSTRRPLGY 114
           EA R+R   MSDE  + YN R+ +T  RR  G+
Sbjct: 369 EAARIRYHQMSDEEKVAYNRRKYETQKRRDEGF 401


>UniRef50_Q10IL3 Cluster: Retrotransposon protein, putative,
           Ty3-gypsy subclass; n=2; Oryza sativa (japonica
           cultivar-group)|Rep: Retrotransposon protein, putative,
           Ty3-gypsy subclass - Oryza sativa subsp. japonica (Rice)
          Length = 380

 Score = 33.1 bits (72), Expect = 3.5
 Identities = 18/42 (42%), Positives = 23/42 (54%)
 Frame = -1

Query: 491 LDSTRXKPRRGVVRTHGSRAPQTVCHRHRARRRESIDPKLPR 366
           L ST+ + RR   R HG R+  +   RHR RR E   P+ PR
Sbjct: 247 LSSTKPQRRRRRSRDHGERSVHSPADRHRERRAE--QPRSPR 286


>UniRef50_Q95WA7 Cluster: Circadian clock protein period; n=1; Bulla
           gouldiana|Rep: Circadian clock protein period - Bulla
           gouldiana (California bubble)
          Length = 903

 Score = 33.1 bits (72), Expect = 3.5
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -3

Query: 471 TSTGRRPNPRQPGSADRVSPSPCTP*GKYRSKAS 370
           TS  +RP PR+ G  ++ +  PCT  G +RS ++
Sbjct: 653 TSHQKRPRPREAGDENKTAKHPCTNSGVFRSSSN 686


>UniRef50_Q4STW6 Cluster: Chromosome undetermined SCAF14091, whole
           genome shotgun sequence; n=3; Tetraodontidae|Rep:
           Chromosome undetermined SCAF14091, whole genome shotgun
           sequence - Tetraodon nigroviridis (Green puffer)
          Length = 674

 Score = 32.7 bits (71), Expect = 4.6
 Identities = 17/49 (34%), Positives = 29/49 (59%)
 Frame = +2

Query: 65  QIILHQLKMYIRSRSYNILAADESMCRLAADYXLDNVHRSSTDDGRALL 211
           Q+ILH ++   R  + N+    +++  L+ +   DNV  SS+DDGR L+
Sbjct: 119 QVILHDVE---RGETLNVFLHIDAVYSLSVNPVNDNVFASSSDDGRVLI 164


>UniRef50_Q96JK2 Cluster: WD repeat-containing protein 22; n=27;
           Eumetazoa|Rep: WD repeat-containing protein 22 - Homo
           sapiens (Human)
          Length = 942

 Score = 32.7 bits (71), Expect = 4.6
 Identities = 16/49 (32%), Positives = 30/49 (61%)
 Frame = +2

Query: 65  QIILHQLKMYIRSRSYNILAADESMCRLAADYXLDNVHRSSTDDGRALL 211
           Q+ILH ++    S + ++ A ++++  L+     DN+  SS+DDGR L+
Sbjct: 124 QVILHDVES---SETLDVFAHEDAVYGLSVSPVNDNIFASSSDDGRVLI 169


>UniRef50_A2VPI0 Cluster: Nucleoside hydrolase iunH; n=7;
           Mycobacterium tuberculosis complex|Rep: Nucleoside
           hydrolase iunH - Mycobacterium tuberculosis C
          Length = 308

 Score = 32.3 bits (70), Expect = 6.1
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +3

Query: 357 LLNTRKLWIDTFPTACTVTVTHGLRSP-AAVGSDDAPSRFXSRRVQ 491
           LL TR   +D  PT  TVT   G R+P A +G    P+ F  R V+
Sbjct: 254 LLTTRTATVDVDPTGATVTDWSGKRNPNARIGMSVDPAVFFDRFVE 299


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 451,487,421
Number of Sequences: 1657284
Number of extensions: 8314855
Number of successful extensions: 21385
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 20732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21380
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 28855457139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)