Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_P23
         (494 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces pombe...    27   2.1  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    25   4.7  
SPAC1006.02 |||WD repeat protein, human GNB1L family|Schizosacch...    25   4.7  
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    25   6.3  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    25   8.3  
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.3  

>SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 229

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 272 SLTKYKSQIFTQAPADGTWRPSHYTLY*FIKHEEALDRYFP 394
           ++ K   ++  QAP+D TW      L+ FI   + L+RY P
Sbjct: 102 AVDKIAKRLHDQAPSDRTWSRMVSNLFAFIS-IQFLNRYLP 141


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 185 MSDERYLXYNLRRVDTSTRRPLGYCKIYY 99
           M   ++  +N +R+D  +  PL Y K YY
Sbjct: 747 METSKHKVFNPKRIDVVSDLPLDYRKSYY 775


>SPAC1006.02 |||WD repeat protein, human GNB1L
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 368

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -2

Query: 388 VSIQSFLVFNKLI*CIVRRSPRSVGWCLCKDLRFIFRQAYE 266
           +SI S +V N L  C    SP+S    LC  L F     Y+
Sbjct: 119 ISIHSNIVVNSLTFCPFSYSPQSKIVVLCNTLNFEELDVYD 159


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 381 IDTFPTACTVTVTHGLRSPAAVGSDDAP 464
           I + PTA    V HG+  P+  G+  +P
Sbjct: 368 ITSLPTASFCPVKHGVSPPSLAGNQPSP 395


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 356 FIKHEEALDRYFPYGVHGDGDTRSAEPGCRGF 451
           F+ +E  L +   +  H +GD +SA  GCR F
Sbjct: 185 FMWNEFMLRQLIKFRSHLNGDEKSALDGCRFF 216


>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 224

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 465 TGRRPNPRQPGSADRVSPSP 406
           T +RPN  QPG+A  +  SP
Sbjct: 78  TSQRPNSWQPGNASTMYASP 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,843,038
Number of Sequences: 5004
Number of extensions: 33295
Number of successful extensions: 68
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)