Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_P23
         (494 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0340 + 2415272-2415486,2415883-2416308,2416313-2417243           28   4.7  
07_01_1193 - 11318111-11318318,11318790-11318884,11320097-113201...    27   6.3  
11_04_0186 - 14651382-14651746,14651935-14652199                       27   8.3  
08_01_0903 - 8897977-8899016,8899128-8899300,8901553-8901666,890...    27   8.3  

>02_01_0340 + 2415272-2415486,2415883-2416308,2416313-2417243
          Length = 523

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 386 YFPYGVHGDGDTRSAEPGCRGFG 454
           + PYG  G G +++  PGC   G
Sbjct: 17  FVPYGASGSGTSKTPHPGCAAGG 39


>07_01_1193 -
           11318111-11318318,11318790-11318884,11320097-11320150,
           11320311-11320648,11323419-11323704
          Length = 326

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +2

Query: 68  IILHQLKMYIRSRSYNILAADESMCRLAADYXLDNVHRSS 187
           +I  + K+ + S     L + E++CR A D  ++N+H +S
Sbjct: 219 VIQREAKLNLTSTEPPKLISLENLCRQAVDIAINNLHEAS 258


>11_04_0186 - 14651382-14651746,14651935-14652199
          Length = 209

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +2

Query: 368 EEALDRYFPYGVHGDGDTRSAEPGC-RGFGR 457
           E+ L  Y P  +HG  D R  E  C RG GR
Sbjct: 76  EKKLSTYHPNNMHGRRDRRVREVSCSRGKGR 106


>08_01_0903 -
           8897977-8899016,8899128-8899300,8901553-8901666,
           8901743-8901836,8901925-8902103,8902165-8902496,
           8913058-8913306
          Length = 726

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
 Frame = +3

Query: 297 SLHKHQPTERGDRRTIH----YINL-LNTRKLWIDTFPTACTVTVTHGLRSPAAVGSDD 458
           S  K  P  +G +R +H    Y++L L +  L++  FP  CT++    +R  AA G  D
Sbjct: 406 SAFKQYPLLQGIKRMLHISYAYLSLPLKSCLLYLSLFPENCTISKGRLIRRWAAEGFID 464


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,218,925
Number of Sequences: 37544
Number of extensions: 234796
Number of successful extensions: 629
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)