Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_P23
         (494 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099003-3|ABA00149.1|  759|Caenorhabditis elegans Hypothetical ...    33   0.11 
Z81472-3|CAB03888.2|  468|Caenorhabditis elegans Hypothetical pr...    29   1.4  

>AF099003-3|ABA00149.1|  759|Caenorhabditis elegans Hypothetical
           protein Y59C2A.3 protein.
          Length = 759

 Score = 33.1 bits (72), Expect = 0.11
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -1

Query: 212 EAGRVRRR*MSDERYLXYNLRRVDTSTRRPLGY 114
           EA R+R   MSDE  + YN R+ +T  RR  G+
Sbjct: 369 EAARIRYHQMSDEEKVAYNRRKYETQKRRDEGF 401



 Score = 29.1 bits (62), Expect = 1.9
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -1

Query: 212 EAGRVRRR*MSDERYLXYNLRRVDTSTRR 126
           EA RVR   MSDE  L +N +R +T  +R
Sbjct: 672 EAARVRYHQMSDEERLAHNQKRAETLRKR 700



 Score = 28.7 bits (61), Expect = 2.4
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 212 EAGRVRRR*MSDERYLXYNLRRVDTSTRR 126
           EA R+R   MSDE  + YN R+ D   +R
Sbjct: 243 EAARIRYHQMSDEEKIAYNRRKYDKFRKR 271


>Z81472-3|CAB03888.2|  468|Caenorhabditis elegans Hypothetical
           protein C16D6.2 protein.
          Length = 468

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 493 HWTRREXNLDGASSEPTAAGLRRPCVTVT 407
           HW RR  NL+G +S P    L  P +T+T
Sbjct: 330 HWLRRHLNLEGDNSSPL---LNHPTMTIT 355


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,351,159
Number of Sequences: 27780
Number of extensions: 198946
Number of successful extensions: 415
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)