Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_P21
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p...    76   5e-15
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl...    37   0.002
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    29   0.55 
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate...    27   1.7  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    27   2.2  
SPAC22A12.02c |mug103||sequence orphan|Schizosaccharomyces pombe...    27   2.2  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    27   2.2  
SPAC664.07c |rad9||checkpoint clamp complex protein Rad9|Schizos...    27   3.0  
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    26   3.9  
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos...    25   6.8  
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual     25   9.0  

>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 75.8 bits (178), Expect = 5e-15
 Identities = 32/84 (38%), Positives = 58/84 (69%)
 Frame = -3

Query: 622 VGNVSFEMPQPGEMVIDKPYSEKTAELIDSEVRDLINNAHKHTTDLLTKHKPNIEKVAER 443
           VG +++  P      + KP+SE TA++ID E+R L+ +A++ T  LL +HK  +E +A+R
Sbjct: 659 VGTIAY--PIDTRETVQKPFSEATAQMIDEEIRKLVKHAYERTKKLLLEHKQGLENIAQR 716

Query: 442 LLKQEILSRDDMIELLGPRPFPEK 371
           LL++E+++ +++  +LGPRP+  K
Sbjct: 717 LLQKEVITYNEVETILGPRPYAYK 740


>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
           subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 709

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 15/52 (28%), Positives = 31/52 (59%)
 Frame = -3

Query: 562 SEKTAELIDSEVRDLINNAHKHTTDLLTKHKPNIEKVAERLLKQEILSRDDM 407
           S  T  L++SE++ L+  +++ +  LL  HK  ++ +A  L+  E L+ ++M
Sbjct: 642 SPATRALVESEIKSLLEASYERSLSLLKSHKKELDALATALVDYEFLTAEEM 693


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 29.1 bits (62), Expect = 0.55
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -3

Query: 556 KTAELIDSEVRDL-INNAHKHTTDLLTKHKPNIEKVAERLL 437
           + AEL  S+V  L + N HK    LLT   PN+E+    LL
Sbjct: 756 RIAELSQSDVATLCLTNMHKILASLLTTDHPNLEESVMLLL 796


>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
           transferase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 453

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = +1

Query: 316 ASCLHLMILCLQRTLHKY 369
           ASCL LMILCL   LH +
Sbjct: 379 ASCLALMILCLYYDLHMH 396


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 16/59 (27%), Positives = 31/59 (52%)
 Frame = -3

Query: 568  PYSEKTAELIDSEVRDLINNAHKHTTDLLTKHKPNIEKVAERLLKQEILSRDDMIELLG 392
            P SE  ++L D+ VR+ I  +HK   +    H+P I+     +   + +  D+ +E++G
Sbjct: 1599 PVSEWVSKL-DTHVRNCIKFSHKQNLEEDFIHEPVIDVDEFAISSSKDIDADEDLEIIG 1656


>SPAC22A12.02c |mug103||sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 124

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 574 DKPYSEKTAELIDSEVRDLINNAHKHTTDLLTKHKPN 464
           D+PY   + ++  S+ RD++   H  +  LL K K N
Sbjct: 82  DRPYCINSEDMPLSDDRDMLKERHVKSRKLLLKEKGN 118


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
 Frame = -3

Query: 487  LLTKHK---PNIEKVAERLLKQEILSRDDMIELLGPRPFPEK-STYEE 356
            +L  HK   P  E +  RLLK E L +D +++   PRP  +  ST +E
Sbjct: 1054 VLVSHKISHPAYELLVSRLLKGEPLPKDVVVKEFKPRPSTKPFSTQDE 1101


>SPAC664.07c |rad9||checkpoint clamp complex protein
           Rad9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 17/75 (22%), Positives = 34/75 (45%)
 Frame = -3

Query: 625 KVGNVSFEMPQPGEMVIDKPYSEKTAELIDSEVRDLINNAHKHTTDLLTKHKPNIEKVAE 446
           K   +S+E  Q    V DK  S    ++    ++DL  +  + T +L    +P  E+V  
Sbjct: 150 KTYKISYEQTQTLHAVFDKSLSHNNFQINSKILKDLTEHFGQRTEELTI--QPLQERVLL 207

Query: 445 RLLKQEILSRDDMIE 401
               +E++   D+++
Sbjct: 208 TSFTEEVVHNRDILK 222


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1201

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 574  DKPYSEKTAELIDSEVRDLINNAHKHT 494
            D    +   EL  +EVR++ N+ HKHT
Sbjct: 1075 DVAQEDNFIELSSNEVRNVSNDEHKHT 1101


>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +3

Query: 96  QYFDLSTTTKICYENSNTQTKKPLNLKGNFKYNSQ*LLLPGTYF 227
           Q+F L+ TT I   N N  +  P N+  +F ++S   +L   Y+
Sbjct: 175 QFFPLTITTLIVKNNKNVVSNLPKNV--SFYFHSDNTVLLNEYY 216


>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1029

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -2

Query: 164 RLFCLRVTVFVTYFSCSRKIKILEL*MWEL 75
           R+F L V +   Y++ S  + +LE+  W L
Sbjct: 798 RVFLLEVIINALYYNPSMSLGVLEMHQWTL 827


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,458,378
Number of Sequences: 5004
Number of extensions: 47527
Number of successful extensions: 164
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)