Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_pT_P21
(630 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0098 + 22373384-22373522,22373566-22373772,22373879-223739... 89 2e-18
01_06_1310 - 36176008-36176472,36176547-36176774,36177313-361780... 85 3e-17
06_03_1468 - 30354724-30354945,30359326-30359497,30359587-303597... 49 3e-06
01_05_0540 + 23069954-23070103,23070170-23070251,23070298-230703... 43 2e-04
01_05_0429 + 22070636-22070662,22071490-22071577,22071908-220721... 40 0.002
01_05_0724 - 24612712-24612852,24612985-24613038,24613340-246134... 38 0.005
01_05_0430 + 22078651-22078677,22079269-22079356,22079669-220799... 37 0.011
05_03_0254 + 11089236-11089290,11089366-11089415,11089530-110895... 31 0.57
06_03_1360 + 29558789-29559020,29559203-29559378,29560285-295603... 29 2.3
03_06_0598 + 34977063-34977220,34977957-34978101,34978362-349784... 29 4.0
04_04_0465 + 25427065-25427113,25428099-25428227,25428387-254284... 28 7.0
05_01_0243 - 1806770-1806832,1806942-1807061,1807275-1807457,180... 27 9.3
>05_05_0098 + 22373384-22373522,22373566-22373772,22373879-22373953,
22374611-22374744,22375189-22375674,22375854-22376621,
22377367-22377594,22378294-22378773
Length = 838
Score = 89.4 bits (212), Expect = 2e-18
Identities = 46/111 (41%), Positives = 70/111 (63%), Gaps = 2/111 (1%)
Frame = -3
Query: 625 KVGNVSFEMPQPGEMVIDKPYSEKTAELIDSEVRDLINNAHKHTTDLLTKHKPNIEKVAE 446
KVG +SF G + KPYS +TA +ID EVR+ + A+K T +L+T+HK + K+AE
Sbjct: 712 KVGLLSFPQRDDG-FEMTKPYSNQTASIIDDEVREWVGKAYKKTVELITEHKEQVAKIAE 770
Query: 445 RLLKQEILSRDDMIELLGPRPF--PEKSTYEEFVEGTGSLDEDTTLPEGLK 299
LL++E+L +DD++ +LG RPF E + Y+ F +G +ED+ E K
Sbjct: 771 MLLEKEVLHQDDLVRVLGERPFKASEPTNYDLFKQGFQD-EEDSKNQEAAK 820
>01_06_1310 -
36176008-36176472,36176547-36176774,36177313-36178080,
36178250-36178732,36179883-36180010,36180539-36180607,
36180688-36180892,36181005-36181067
Length = 802
Score = 85.4 bits (202), Expect = 3e-17
Identities = 42/104 (40%), Positives = 70/104 (67%), Gaps = 2/104 (1%)
Frame = -3
Query: 625 KVGNVSFEMPQPGEMVIDKPYSEKTAELIDSEVRDLINNAHKHTTDLLTKHKPNIEKVAE 446
KVG +SF + G + KPYS +TA +ID+EVR+ + A++ T +L+ +HK + ++AE
Sbjct: 681 KVGLLSFPQREDG-FEMSKPYSSQTASIIDTEVREWVAKAYEKTVELIKQHKDQVAQIAE 739
Query: 445 RLLKQEILSRDDMIELLGPRPFP--EKSTYEEFVEGTGSLDEDT 320
LL++E+L +DD++++LG RPF E + Y+ F + G DED+
Sbjct: 740 LLLEKEVLHQDDLVQVLGERPFKTLEPTNYDRFKQ--GFQDEDS 781
>06_03_1468 -
30354724-30354945,30359326-30359497,30359587-30359770,
30359865-30360111,30360817-30362052
Length = 686
Score = 49.2 bits (112), Expect = 3e-06
Identities = 20/63 (31%), Positives = 40/63 (63%)
Frame = -3
Query: 586 EMVIDKPYSEKTAELIDSEVRDLINNAHKHTTDLLTKHKPNIEKVAERLLKQEILSRDDM 407
+M K YS TA+++D+EVR+L+ A+ T ++T H + K+A+ L+++E + ++
Sbjct: 613 QMSSQKDYSMATADVVDAEVRELVEKAYSRATQIITTHIDILHKLAQLLMEKETVDGEEF 672
Query: 406 IEL 398
+ L
Sbjct: 673 MSL 675
>01_05_0540 +
23069954-23070103,23070170-23070251,23070298-23070355,
23071276-23071318,23072262-23073341,23073448-23073509,
23073759-23073855,23074703-23074984,23075073-23075147,
23075223-23075276,23075373-23075515,23076567-23076858
Length = 805
Score = 42.7 bits (96), Expect = 2e-04
Identities = 22/76 (28%), Positives = 45/76 (59%)
Frame = -3
Query: 583 MVIDKPYSEKTAELIDSEVRDLINNAHKHTTDLLTKHKPNIEKVAERLLKQEILSRDDMI 404
M ++K S + I++EV L+ + + LL KH+ ++ VA LL++EIL+ D++I
Sbjct: 626 MHLEKWPSVQMQATINAEVLKLLGESRERVKRLLKKHEMQLQAVANALLEKEILNADEII 685
Query: 403 ELLGPRPFPEKSTYEE 356
+++ P + T+++
Sbjct: 686 KVVQPYKREPQITFQD 701
>01_05_0429 +
22070636-22070662,22071490-22071577,22071908-22072168,
22072925-22073161,22073251-22073375,22074093-22074569,
22074655-22075569
Length = 709
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/59 (33%), Positives = 34/59 (57%)
Frame = -3
Query: 571 KPYSEKTAELIDSEVRDLINNAHKHTTDLLTKHKPNIEKVAERLLKQEILSRDDMIELL 395
K S +T LI+ EV+ L+ NA+ + +LTKH +A+ LL+ E L+ + ++L
Sbjct: 593 KSMSTETRLLIEQEVKSLLENAYNNAKTILTKHSKEHHVLAQALLEHETLTGAQIKKIL 651
>01_05_0724 -
24612712-24612852,24612985-24613038,24613340-24613429,
24613499-24613780,24613926-24614119,24614379-24614508,
24614610-24614690,24614766-24614891,24615019-24615076,
24615319-24615380,24615753-24615803,24615946-24616065,
24616280-24616403,24616832-24616920,24617304-24617396,
24617910-24618063,24618673-24619178
Length = 784
Score = 38.3 bits (85), Expect = 0.005
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Frame = -3
Query: 580 VIDKPYSEKTAELIDSEVRDLINNAHKHTTDLLTKHKPNIEKVAERLLKQEILSRDDMIE 401
V ++P E + ID+EV L+ A+ LL KH+ + +A LL++E L+ D++ +
Sbjct: 705 VKERPSVEMQSR-IDAEVVKLLREAYGRVKRLLKKHEKQLHALANALLERETLTADEINK 763
Query: 400 LLGP-RPFPEKSTYEE 356
++ P + P+ S EE
Sbjct: 764 VVHPYQEEPQLSFQEE 779
>01_05_0430 +
22078651-22078677,22079269-22079356,22079669-22079929,
22080693-22080950,22081036-22081160,22082375-22082851,
22082937-22083848
Length = 715
Score = 37.1 bits (82), Expect = 0.011
Identities = 17/51 (33%), Positives = 29/51 (56%)
Frame = -3
Query: 571 KPYSEKTAELIDSEVRDLINNAHKHTTDLLTKHKPNIEKVAERLLKQEILS 419
K S +T LI+ EV+ + NA+ + ++L KH + +A LL+ E L+
Sbjct: 600 KSMSTETRLLIEKEVKCFVENAYNNAKNILIKHNKELHALANALLEHETLT 650
>05_03_0254 +
11089236-11089290,11089366-11089415,11089530-11089562,
11090601-11091674,11092245-11092728,11092857-11092882,
11092883-11092993,11093082-11093171,11093251-11093322,
11094043-11094153,11095086-11095143,11095605-11095804,
11096666-11096818,11097134-11097334
Length = 905
Score = 31.5 bits (68), Expect = 0.57
Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Frame = -3
Query: 613 VSFEMPQPGEMVIDKPYSEKTAELID--SEVRDLINNAHKHTT---DLLTKHKPNIEK 455
+ + + GE I YS A L D SEV + INN HKHT DL + +EK
Sbjct: 455 IDLDQLENGEYRISPRYSSDLAVLKDELSEVENHINNLHKHTAADLDLTIDKQLKLEK 512
>06_03_1360 +
29558789-29559020,29559203-29559378,29560285-29560346,
29560426-29561212,29561516-29562244
Length = 661
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -3
Query: 622 VGNVSFEMPQPGEMVIDKPYSEKTAELIDSEVRDLINN 509
VGNV E PQ G +DKP E + +++ + N
Sbjct: 284 VGNVEKENPQVGNAPVDKPTQEVPQNQLPTQIPQSVQN 321
>03_06_0598 +
34977063-34977220,34977957-34978101,34978362-34978481,
34978640-34978774,34979138-34979213,34979398-34979450,
34979594-34979695,34979848-34979964,34980170-34980228,
34980810-34980984,34981628-34981762,34981855-34981953,
34982143-34982251,34982981-34983093,34983206-34983265,
34983821-34983835
Length = 556
Score = 28.7 bits (61), Expect = 4.0
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Frame = -3
Query: 598 PQPGEMVIDK-PYSE-KTAELIDSEVRDLINNAHKHTTDLLTKHKPNIEKVAERLLKQEI 425
P+ GE ++ + P++E K A ++ V +L+ TT + P+I ++ R +
Sbjct: 457 PKVGERLLCRHPFNESKRAYVVPQHVEELLKCYWPGTTSEPREELPSINEIRSRCMGYLD 516
Query: 424 LSRDDMIELLGPRPF 380
R D + L P P+
Sbjct: 517 RMRPDHMRRLNPTPY 531
>04_04_0465 +
25427065-25427113,25428099-25428227,25428387-25428479,
25428681-25428953,25429037-25429288,25429735-25430118,
25430243-25430483,25431986-25432736
Length = 723
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -1
Query: 300 RIGIRRNSPQHHRRKPAHQAP 238
R GIR P+HHR++P H AP
Sbjct: 60 RPGIRHPVPRHHRKRP-HVAP 79
>05_01_0243 -
1806770-1806832,1806942-1807061,1807275-1807457,
1807554-1807693,1807768-1808010,1808664-1808781,
1808902-1808977,1809054-1809120,1809201-1809288,
1809381-1809491,1809632-1809799,1809946-1810040,
1810123-1810162,1810242-1810318,1810607-1810655,
1810756-1810812,1810959-1811048,1811160-1811223,
1812085-1812245
Length = 669
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = -3
Query: 526 RDLIN-NAHKHTTDLLTKHKPNIEKVAERLLKQEILSR 416
RDL+ K ++L +KP IEKV ++L +Q + ++
Sbjct: 630 RDLVTATMKKKRNNMLKYYKPEIEKVYQKLEEQRVAAK 667
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,148,964
Number of Sequences: 37544
Number of extensions: 274656
Number of successful extensions: 790
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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