Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_P21
         (630 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    27   0.15 
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    27   0.15 
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   3.2  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   5.7  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   9.9  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   9.9  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   9.9  

>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 27.1 bits (57), Expect = 0.15
 Identities = 10/44 (22%), Positives = 23/44 (52%)
 Frame = -3

Query: 529 VRDLINNAHKHTTDLLTKHKPNIEKVAERLLKQEILSRDDMIEL 398
           ++DL +N H H  ++    K   EK+   +++  ++S+    +L
Sbjct: 48  IKDLFDNVHNHIQNIFKIIKSTNEKITRYIIRMFLISQQKTSKL 91


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 27.1 bits (57), Expect = 0.15
 Identities = 10/44 (22%), Positives = 23/44 (52%)
 Frame = -3

Query: 529 VRDLINNAHKHTTDLLTKHKPNIEKVAERLLKQEILSRDDMIEL 398
           ++DL +N H H  ++    K   EK+   +++  ++S+    +L
Sbjct: 31  IKDLFDNVHNHIQNIFKIIKSTNEKITRYIIRMFLISQQKTSKL 74


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = -3

Query: 535 SEVRDLINNAHKHTTDLLTKHKPNIEKVAERLLKQEILSRDDMIELL 395
           SE  D+ +   +H T++       I + ++RL   + L R+D I LL
Sbjct: 365 SEGEDISDYKFRHITEITILTVQLIVEFSKRLPGFDELMREDQIALL 411


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = +1

Query: 247 MGWFPAVVLWAVSPYSNP 300
           + W P +++   +PYS P
Sbjct: 355 LNWMPRLLMMRRTPYSTP 372


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = -3

Query: 574 DKPYSEKTAELIDSEVRDLINNAHKHTTDL 485
           D PYSE   E I  EV   I     +T  +
Sbjct: 159 DPPYSEARFEEIKKEVSSYIKKIGYNTASV 188


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +3

Query: 564 YGLSITISPGCGISKDTFP 620
           Y   +TI  GC ++ + FP
Sbjct: 120 YSSRLTIKAGCPMNLENFP 138


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/31 (25%), Positives = 14/31 (45%)
 Frame = -3

Query: 382 FPEKSTYEEFVEGTGSLDEDTTLPEGLKDWN 290
           FP  +     +   G   E+  +P G++ WN
Sbjct: 31  FPNDNIRNTLISN-GDYIEENNMPNGMQIWN 60


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,749
Number of Sequences: 438
Number of extensions: 3222
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)