Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_P16
         (636 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc...    29   0.74 
SPAC22A12.03c |csn4||COP9/signalosome complex subunit Csn4 |Schi...    27   2.3  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    26   4.0  
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|...    26   5.2  
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    26   5.2  
SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||...    25   9.1  
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    25   9.1  
SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac...    25   9.1  

>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
            polymerase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1120

 Score = 28.7 bits (61), Expect = 0.74
 Identities = 18/73 (24%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
 Frame = -2

Query: 230  GLKLRMNNLFDGIQSLEESTNA-YLNENWRPVSESLRPILSKT--IEDILLGFTQTLFHN 60
            G + +++   + I  +E+   A Y N   + V E+LR + ++   I+D L      + H+
Sbjct: 870  GARKQISEKLENIDGMEKLKVADYANYLTKKVFEALRSLFTQAHEIQDWLSACCNLITHS 929

Query: 59   LPANFLIGDVKNK 21
            LPA+++   +K++
Sbjct: 930  LPADYIKEGIKDE 942


>SPAC22A12.03c |csn4||COP9/signalosome complex subunit Csn4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 377

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
 Frame = -2

Query: 341 FEPSNMTIDIVSDIKLYEKDGFVFFNVTAAHVKYSIGGLKLR---MNNLFDGIQSLEEST 171
           FE +   ++I      + K   V F++    V  SI  L+LR   ++ L+  +QSLEE+ 
Sbjct: 33  FEQAKRCLNICCGSNNFAKRNDVLFSLL--DVAVSISSLELRKELISELYVPVQSLEEAP 90

Query: 170 NAYL 159
           + YL
Sbjct: 91  SEYL 94


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -2

Query: 494  FGKTEVLMSQVDSKTYDFYTKVRV 423
            F   EVL S++ SK  D  TKVRV
Sbjct: 1787 FESKEVLTSRMSSKVQDVATKVRV 1810


>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 13/55 (23%), Positives = 28/55 (50%)
 Frame = -2

Query: 539 PVNVNAALDNVTVTGFGKTEVLMSQVDSKTYDFYTKVRVPKIRIEGTYDLKGKIL 375
           P+  N   ++   +G  K        D+  ++ ++ ++ PK++ EG+  LKG+ L
Sbjct: 172 PIITNLKTESSKSSGAKKATSNAKITDTMLFNHFSSIQKPKLKAEGS-TLKGQAL 225


>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = +3

Query: 264 IEKYKAVLFIQFDITHDVYCHVTWFKPAFSSADQRYY*NFSF*IIRAFYSNFRHTYFSI 440
           IE+Y A   IQ  +   +Y H  WF  A +  ++R +   SF +  +      H  +S+
Sbjct: 487 IEQYSAKFLIQQAL---LYLHRPWFVRAATRKEEREHYKSSFNLCTSVSHELIHNLYSL 542


>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -2

Query: 212 NNLFDGIQSLEESTNAYLNENWRPVSESLRPILSKT 105
           N L    + L E   +Y+N+    V+  LR  +SKT
Sbjct: 79  NLLRPASEGLNEGEQSYINKRISKVNSELRSFISKT 114


>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 673

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -2

Query: 212 NNLFDGIQSLEESTNAYLNENWRPVSESLRPILSKT 105
           N L    + L E   +Y+N+    V+  LR  +SKT
Sbjct: 79  NLLRPASEGLNEGEQSYINKRISKVNSELRSFISKT 114


>SPBC216.01c ||SPBC713.13c|DNA damage response protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 836

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 179 ESTNAYLNENWRPVSESL 126
           E T  YLN+N+RP  ESL
Sbjct: 656 EDTLDYLNKNYRPQLESL 673


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,427,777
Number of Sequences: 5004
Number of extensions: 49605
Number of successful extensions: 135
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)