Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_P16
         (636 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0486 + 16463144-16463216,16464058-16464105,16464415-164644...    31   1.0  
06_02_0297 - 13891954-13892556,13893019-13893855,13894179-138943...    30   1.8  
10_08_0173 + 15414628-15414890,15415001-15415074,15416322-154164...    29   2.3  
07_03_0504 - 18842442-18844668,18845418-18845428                       29   4.1  
02_02_0620 + 12210812-12210997,12212397-12212474,12212744-122128...    27   9.4  

>04_03_0486 +
           16463144-16463216,16464058-16464105,16464415-16464467,
           16465429-16465494,16465705-16465779,16466333-16466407,
           16467538-16467608,16467698-16467749,16468461-16468550,
           16469359-16469451,16469590-16469697
          Length = 267

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = +1

Query: 55  GKLWNSVCVKPNRMSSIVFDRIGRRDSETGLQFSLRYALVLSSKDWMPSKRLFMRSF 225
           GK+   +CVKPN+  +++F  +G  D ET          VL  + W  +K +  + F
Sbjct: 211 GKMVKGLCVKPNKGDAVLFWSMG-LDGETDSNSIHGGCPVLEGEKWSATKWMRQKEF 266


>06_02_0297 -
           13891954-13892556,13893019-13893855,13894179-13894394,
           13895455-13895874,13896198-13896506
          Length = 794

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 23/98 (23%), Positives = 45/98 (45%), Gaps = 4/98 (4%)
 Frame = +1

Query: 28  FTSPIKKLAG--KLWNSVCVKPNRMSSIVFDRIGRRDSETGLQFSLRYALVLSSKDWMPS 201
           F   +K+LAG  K+++  C+K    ++ V+D I    S +    SL   + +   +  P 
Sbjct: 183 FARKLKELAGIAKIFDDTCIKETDFNANVYDDIHSDSSPSDCSISLLQKMGVDMCELAPE 242

Query: 202 KRLFM--RSFNPPIEYLT*AAVTLKNTKPSFSYNLISL 309
           + ++     FN P + ++     L+    ++S NL  L
Sbjct: 243 EVVWSLDPGFNDPAKCISFKLKVLRKKLLAWSKNLSKL 280


>10_08_0173 +
           15414628-15414890,15415001-15415074,15416322-15416401,
           15417186-15417231,15417334-15417368,15417751-15417771,
           15418418-15419133,15419292-15419324,15419517-15419813,
           15420213-15420659,15420738-15420886,15421408-15421697,
           15421774-15421898,15422006-15422156
          Length = 908

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +3

Query: 144 PPVLVKICIGAFLQRLDAVKEIIHAQLQSTY 236
           PP LV +  G  + R+DAV++ + A++Q+ Y
Sbjct: 51  PPPLVGVPPGVLMARIDAVRDELAAEVQAKY 81


>07_03_0504 - 18842442-18844668,18845418-18845428
          Length = 745

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 23/64 (35%), Positives = 30/64 (46%)
 Frame = -2

Query: 233 GGLKLRMNNLFDGIQSLEESTNAYLNENWRPVSESLRPILSKTIEDILLGFTQTLFHNLP 54
           GGL L +  L  G+   +EST       W+ V E L+   SK I+D+L      L H L 
Sbjct: 207 GGLPLAIA-LLSGLMKTKESTG-----EWQKVFEYLKSKQSKQIDDMLSICFDDLPHELK 260

Query: 53  ANFL 42
             FL
Sbjct: 261 CCFL 264


>02_02_0620 +
           12210812-12210997,12212397-12212474,12212744-12212848,
           12212998-12213022,12213214-12213266,12213523-12213635,
           12213777-12213801,12214560-12214601,12214666-12214726,
           12216027-12216043,12217143-12217257,12217431-12218659
          Length = 682

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 19/68 (27%), Positives = 33/68 (48%)
 Frame = -2

Query: 224 KLRMNNLFDGIQSLEESTNAYLNENWRPVSESLRPILSKTIEDILLGFTQTLFHNLPANF 45
           K + NN+ +GI  +  S    ++  W+ V  + + + + T    L      + H+LPAN+
Sbjct: 123 KEKHNNVENGITLVGASREILIDVVWKKVIFNDKILEAMTSNGKLKDMFAKILHSLPANY 182

Query: 44  LIGDVKNK 21
             G VK K
Sbjct: 183 --GKVKMK 188


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,940,133
Number of Sequences: 37544
Number of extensions: 288817
Number of successful extensions: 596
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)