Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_P16
         (636 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK021889-1|BAB13927.1|  142|Homo sapiens protein ( Homo sapiens ...    34   0.37 
BC002670-1|AAH02670.1|  236|Homo sapiens SERTA domain containing...    30   6.0  
AY130860-1|AAM77800.1|  236|Homo sapiens SCDK4-binding protein p...    30   6.0  
AK223011-1|BAD96731.1|  236|Homo sapiens SERTA domain containing...    30   6.0  
AK222970-1|BAD96690.1|  236|Homo sapiens SERTA domain containing...    30   6.0  
AF366402-1|AAK52831.1|  236|Homo sapiens TRIP-Br1 protein.             30   6.0  
AF117959-1|AAF08349.1|  236|Homo sapiens CDK4-binding protein p3...    30   6.0  

>AK021889-1|BAB13927.1|  142|Homo sapiens protein ( Homo sapiens
           cDNA FLJ11827 fis, clone HEMBA1006502. ).
          Length = 142

 Score = 34.3 bits (75), Expect = 0.37
 Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
 Frame = +1

Query: 205 RLFMRSFNPPIEYLT*AAV--TLKNTKPSFSYNLISLTMSIVMLLGSNQHFPRPTKGITR 378
           R FMR     I  LT A +   +KN +P   Y LI + ++   L  S+  FP+P K + +
Sbjct: 53  RHFMRPLYSGIHCLTTADIHNAMKNGEPLLIYLLIMIPLTSSPLFPSSSLFPQPNKKLKQ 112

Query: 379 IFPFKSYVPSILIL 420
           I  F  +   +++L
Sbjct: 113 IHIFVLFFAYLVLL 126


>BC002670-1|AAH02670.1|  236|Homo sapiens SERTA domain containing 1
           protein.
          Length = 236

 Score = 30.3 bits (65), Expect = 6.0
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = -2

Query: 206 LFDGIQSLEES--TNAYLNENWRPVSESLRP 120
           L DG++ L E   T+ Y NE W P SE L+P
Sbjct: 166 LDDGLEGLFEDIDTSMYDNELWAPASEGLKP 196


>AY130860-1|AAM77800.1|  236|Homo sapiens SCDK4-binding protein
           p34SEI1 protein.
          Length = 236

 Score = 30.3 bits (65), Expect = 6.0
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = -2

Query: 206 LFDGIQSLEES--TNAYLNENWRPVSESLRP 120
           L DG++ L E   T+ Y NE W P SE L+P
Sbjct: 166 LDDGLEGLFEDIDTSMYDNELWAPASEGLKP 196


>AK223011-1|BAD96731.1|  236|Homo sapiens SERTA domain containing 1
           variant protein.
          Length = 236

 Score = 30.3 bits (65), Expect = 6.0
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = -2

Query: 206 LFDGIQSLEES--TNAYLNENWRPVSESLRP 120
           L DG++ L E   T+ Y NE W P SE L+P
Sbjct: 166 LDDGLEGLFEDIDTSMYDNELWAPASEGLKP 196


>AK222970-1|BAD96690.1|  236|Homo sapiens SERTA domain containing 1
           variant protein.
          Length = 236

 Score = 30.3 bits (65), Expect = 6.0
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = -2

Query: 206 LFDGIQSLEES--TNAYLNENWRPVSESLRP 120
           L DG++ L E   T+ Y NE W P SE L+P
Sbjct: 166 LDDGLEGLFEDIDTSMYDNELWAPASEGLKP 196


>AF366402-1|AAK52831.1|  236|Homo sapiens TRIP-Br1 protein.
          Length = 236

 Score = 30.3 bits (65), Expect = 6.0
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = -2

Query: 206 LFDGIQSLEES--TNAYLNENWRPVSESLRP 120
           L DG++ L E   T+ Y NE W P SE L+P
Sbjct: 166 LDDGLEGLFEDIDTSMYDNELWAPASEGLKP 196


>AF117959-1|AAF08349.1|  236|Homo sapiens CDK4-binding protein
           p34SEI1 protein.
          Length = 236

 Score = 30.3 bits (65), Expect = 6.0
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = -2

Query: 206 LFDGIQSLEES--TNAYLNENWRPVSESLRP 120
           L DG++ L E   T+ Y NE W P SE L+P
Sbjct: 166 LDDGLEGLFEDIDTSMYDNELWAPASEGLKP 196


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,172,455
Number of Sequences: 237096
Number of extensions: 1646779
Number of successful extensions: 3614
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3614
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6972732040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)