Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_P16
         (636 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41105-12|AAA82406.1|  556|Caenorhabditis elegans Hypothetical p...    33   0.23 
Z69662-3|CAA93502.1|  449|Caenorhabditis elegans Hypothetical pr...    30   1.2  
L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family...    29   2.1  
AC084158-1|AAK68563.2| 1256|Caenorhabditis elegans Hypothetical ...    29   3.7  
AC006794-5|AAK68502.1|  821|Caenorhabditis elegans Hypothetical ...    29   3.7  
U53338-4|AAA96192.3|  235|Caenorhabditis elegans Hypothetical pr...    28   6.4  
AF317421-1|AAK69599.1|  235|Caenorhabditis elegans lysosomal-ass...    28   6.4  
Z82068-4|CAE17983.1|  185|Caenorhabditis elegans Hypothetical pr...    27   8.5  

>U41105-12|AAA82406.1|  556|Caenorhabditis elegans Hypothetical
           protein T02G5.12 protein.
          Length = 556

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 20/94 (21%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
 Frame = -2

Query: 356 RGKCWFEPSNMTIDIVSDIKLYEKDGFVFFNVTAAHVKYSIGGLKLRMNNLFDGIQSLEE 177
           R + W    ++TI  +     Y+ DG++  ++ A    ++I       + +   +  L++
Sbjct: 424 RNRLWMYNISLTICGIVTAFCYKFDGYILLDIYAVLFGFTIASYVCLTSVILVDLLGLDK 483

Query: 176 STNAY-LNENWRPVSESLRPILSKTIEDILLGFT 78
            TNA+ L   W+ V   + P++S  + D+   +T
Sbjct: 484 LTNAFGLLLLWQGVGTVIGPLVSGYLADLTGNYT 517


>Z69662-3|CAA93502.1|  449|Caenorhabditis elegans Hypothetical
           protein F56D5.3 protein.
          Length = 449

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 30/118 (25%), Positives = 48/118 (40%), Gaps = 9/118 (7%)
 Frame = -2

Query: 341 FEPSNMTIDIVSDIKL-YEKDGFVFFNVTA--------AHVKYSIGGLKLRMNNLFDGIQ 189
           F+    T++    + + YEK GF F  +T         AH + S    +       + I+
Sbjct: 254 FQDKGTTVEDAKQMCIEYEKRGFDFVELTGGTAEKFVFAHQRESTVIREAFFVEFAETIR 313

Query: 188 SLEESTNAYLNENWRPVSESLRPILSKTIEDILLGFTQTLFHNLPANFLIGDVKNKKK 15
            + ++T  YL   +R     +  I   T + I LG   T   +LP   L GDV +  K
Sbjct: 314 PVFKNTVVYLTGGFRTTGAMVDAITRNTTQGIGLGRPATAEPDLPKKLLNGDVPSAVK 371


>L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family
           protein 3 protein.
          Length = 3343

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 18/66 (27%), Positives = 32/66 (48%)
 Frame = -2

Query: 353 GKCWFEPSNMTIDIVSDIKLYEKDGFVFFNVTAAHVKYSIGGLKLRMNNLFDGIQSLEES 174
           GK     S  T+D +S   + + DGF+F  VT    + +     +R+  +  G+  L  S
Sbjct: 153 GKYELVDSLATVDTMSPFGIVQSDGFLFLEVTGKLDRETRDLYSMRLTAIDQGVPEL--S 210

Query: 173 TNAYLN 156
           ++ +LN
Sbjct: 211 SSCHLN 216


>AC084158-1|AAK68563.2| 1256|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.19 protein.
          Length = 1256

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/46 (32%), Positives = 27/46 (58%)
 Frame = -2

Query: 218 RMNNLFDGIQSLEESTNAYLNENWRPVSESLRPILSKTIEDILLGF 81
           + NNL DG+QSL ++T+     N     + L+PI+S +++  +  F
Sbjct: 378 QQNNLADGLQSLFKTTDQLSRMN-----DKLKPIVSSSVQQTIAVF 418


>AC006794-5|AAK68502.1|  821|Caenorhabditis elegans Hypothetical
           protein Y50D4A.1 protein.
          Length = 821

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
 Frame = -2

Query: 317 DIVSDIKLYEKDGFVFFN------VTAAHVKYSIGGLKLRMNNLFDGIQSLEESTNAYLN 156
           D++ +  L+  DGF+F++       +A H +    G+ L+   +F    ++EES   +  
Sbjct: 22  DVLPEKGLHNSDGFLFYHASFRPLTSAQHRRAEEHGIDLKTKKVF----TVEESIQVF-- 75

Query: 155 ENWRPVSESLRPILSKTIEDI 93
           ENWR  +      L+K  E I
Sbjct: 76  ENWRKFATEHNMKLAKAPEYI 96


>U53338-4|AAA96192.3|  235|Caenorhabditis elegans Hypothetical
           protein C05E11.3 protein.
          Length = 235

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +2

Query: 311 RCLLSCYLVQTSIF-LGRPKVLLEFFLLNHTCLLF 412
           RCL +C+ V+T  F +G   VL+  F L H+  ++
Sbjct: 39  RCLCNCFHVKTGAFIIGCVHVLMILFFLIHSLFVY 73


>AF317421-1|AAK69599.1|  235|Caenorhabditis elegans
           lysosomal-associated transmembraneprotein protein.
          Length = 235

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +2

Query: 311 RCLLSCYLVQTSIF-LGRPKVLLEFFLLNHTCLLF 412
           RCL +C+ V+T  F +G   VL+  F L H+  ++
Sbjct: 39  RCLCNCFHVKTGAFIIGCVHVLMILFFLIHSLFVY 73


>Z82068-4|CAE17983.1|  185|Caenorhabditis elegans Hypothetical
           protein W04A4.6 protein.
          Length = 185

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = +3

Query: 126 QRFRNRPPVLVKICIGAFLQRLDAVKEIIHAQL 224
           +R +  P +L  +C+  +L R+DA +++ H +L
Sbjct: 58  ERRKKLPTILENLCMFEWLHRVDAHRDLSHEEL 90


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,219,546
Number of Sequences: 27780
Number of extensions: 269037
Number of successful extensions: 699
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)