Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_P16
         (636 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    72   4e-15
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   2.5  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   5.7  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   7.6  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 72.1 bits (169), Expect = 4e-15
 Identities = 48/179 (26%), Positives = 89/179 (49%), Gaps = 6/179 (3%)
 Frame = -2

Query: 572 IPKIRILQGEGPVNVNAALDNVTVTGFGKT-EVLMSQVDSKTYDFYTKVRVPKIRIEGTY 396
           +  ++I + +G V +     N+ + G  K  E+    +D       ++   P++     Y
Sbjct: 72  VDSVKIGESQGSVTLRQEYKNIKLYGLTKNLEIKNYNIDWDKCILSSESYNPQVDFVADY 131

Query: 395 DLKGKILVIPLVGRGKCWFEPSNMTI-DIVS--DI--KLYEKDGFVFFNVTAAHVKYSIG 231
            ++GK+L++P+ G GK     SN+T+ D+ S  DI  + YEK+G  +  +    VK++  
Sbjct: 132 KIEGKVLLLPVRGAGK-----SNITMYDLKSHNDIYCEKYEKNGETYLRIKKHAVKFNPA 186

Query: 230 GLKLRMNNLFDGIQSLEESTNAYLNENWRPVSESLRPILSKTIEDILLGFTQTLFHNLP 54
            +KLR  NLFDG + L E  N ++NEN   + + L+    +T   +       +F+ +P
Sbjct: 187 KVKLRFENLFDGNKELGEQMNRFINENSELLFKELQAAYEETFSLVFTKIDNEIFNRVP 245


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 11/19 (57%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
 Frame = -1

Query: 600 RY-ASTRPIKYSENKNFAR 547
           RY A T+PIKY+++KN  R
Sbjct: 284 RYIAVTQPIKYAKHKNNRR 302


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +1

Query: 382 FPFKSYVPSILIL 420
           F F++Y+PSILI+
Sbjct: 244 FVFQTYLPSILIV 256


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = -2

Query: 461 DSKTYDFYTKVRVPKIR 411
           +++TYD +  +R+P +R
Sbjct: 173 ENETYDEFDTIRIPIVR 189


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,388
Number of Sequences: 438
Number of extensions: 3287
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)