Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_P14
         (444 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    27   1.7  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    26   2.3  
SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz...    25   4.0  
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    25   5.2  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    24   9.1  
SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha...    24   9.1  

>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -3

Query: 244 GGRAHSPPGVKWLLEPIDIYN 182
           GG  H P  V WLL P DIY+
Sbjct: 235 GGPLHDPNTVMWLLRP-DIYS 254


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +3

Query: 201  SSNHLTP-GGL*ARPPIYAIKIK*KRNISLIVSRLLLKHDHSQSRERIFSLYS 356
            S  HLTP   +  R PIY   +     + L  S  L+++ HSQ+ E+IF + S
Sbjct: 1211 SKYHLTPIPKIDIRYPIYKENVTIHTWMQLF-SLKLMEYAHSQNAEKIFGICS 1262


>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 130 YKGCPALQAETRYCFTA 80
           Y  CP L +  R+CF+A
Sbjct: 517 YPACPLLTSRVRFCFSA 533


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 326 LRVIVL*EETRDYETYVSFLFYFYCVDGWTSSQ 228
           L V VL      +E YV F   + CV  W++S+
Sbjct: 73  LPVAVLLSPENAFELYVIFQSGYVCVHDWSNSE 105


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +3

Query: 276  NISLIVSRLLLKHDHSQSRERIFSLYSFSS 365
            +I  IVSRL   H    +RE  FS+  F S
Sbjct: 1065 SIKRIVSRLQPLHSRQYTRESPFSIKDFMS 1094


>SPBC29A3.05 |||chromatin remodeling complex
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 139

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 157 CKF*GLTYSYKGCPALQAETR 95
           C+  G +Y  KGC  + +ETR
Sbjct: 113 CQNCGTSYCSKGCEVIHSETR 133


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,608,451
Number of Sequences: 5004
Number of extensions: 27987
Number of successful extensions: 51
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)