Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_P14
         (444 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   8.0  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   8.0  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -2

Query: 110 SSRNALLLHGRNRRGGNTYPCGLTRGPATR 21
           +  NA+LL GR+++     P G T     R
Sbjct: 366 TKENAMLLSGRSQKSTTGPPPGPTPAQKAR 395


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +1

Query: 316 ITLKVVRESSPYIPLAPNSLRDSPLPEDS 402
           +T  +VR   P+IP    SL      E+S
Sbjct: 442 VTYFIVRALKPFIPAVTKSLASLTDAENS 470


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,201
Number of Sequences: 438
Number of extensions: 1912
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11574126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)