Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_P09
         (633 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    28   0.97 
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    27   2.3  
SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyc...    27   2.3  
SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   5.2  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    25   6.9  

>SPAC29B12.10c |||OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 298 NSNKIIKVKFNFNRTKIEMY*VTYDKSWLCQSLCLNF 408
           NS++++   ++FN TK E Y   Y       S  LNF
Sbjct: 452 NSSRVLNSDYSFNHTKYESYSPLYMPMSYSMSTALNF 488


>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 159 LIHWTYRTLHLNKTKFIHF 215
           LI+W Y   HL KT  +HF
Sbjct: 391 LINWLYSNFHLPKTVSLHF 409


>SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 431

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +2

Query: 431 RYGKQFYKIKS*NVIYVIKNTIDNILIDNTEKKKSSR 541
           RYG++F++I     I  IKN  D++++  T +   S+
Sbjct: 295 RYGQEFHQIMGDTDIQSIKNEGDHLVVQLTSQMDKSK 331


>SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 127

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -2

Query: 272 GIVMYLIYFCSFCLTFQAL 216
           G+  YLIYFC +C  F AL
Sbjct: 48  GVKRYLIYFC-YCANFIAL 65


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +1

Query: 115  TFNGLYNRHTHFFK 156
            +F+ L NRHTHF+K
Sbjct: 1314 SFDELMNRHTHFWK 1327


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,228,762
Number of Sequences: 5004
Number of extensions: 39591
Number of successful extensions: 83
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)