Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_P08
         (403 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.04c |||mitochondrial ribosomal protein subunit L34|Schi...    34   0.007
SPCPJ732.03 |meu15||sequence orphan|Schizosaccharomyces pombe|ch...    25   5.8  
SPBC19G7.09 |ulp1||SUMO deconjugating enzyme Ulp1|Schizosaccharo...    24   7.7  

>SPBC21C3.04c |||mitochondrial ribosomal protein subunit
           L34|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 108

 Score = 34.3 bits (75), Expect = 0.007
 Identities = 15/34 (44%), Positives = 23/34 (67%)
 Frame = -1

Query: 109 RPNEVKRVRRHGWDFRMSTPNGRRIIMRRLLKGR 8
           +P+  KR R+HG+  R+ + NGRR++  R  KGR
Sbjct: 70  QPSNRKRKRKHGFLSRIRSVNGRRVLRDRRQKGR 103


>SPCPJ732.03 |meu15||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 150

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 109 RPNEVKRVRRHGWDFRMSTPNGRRIIMR 26
           RPNE +     GWDF +  P  R +++R
Sbjct: 107 RPNEERLSALGGWDF-LRIPKKRVLVLR 133


>SPBC19G7.09 |ulp1||SUMO deconjugating enzyme
           Ulp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 568

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -1

Query: 229 LQPLKLIRQSSIYTGVSSSLVRPDAFLLSSIRTKVRCYFPRPN 101
           L P+ L    S  +   S  +  +A   SS R     YFPRP+
Sbjct: 133 LDPIALQNLFSPASDTHSQNIHDEALSPSSFRVSRSRYFPRPH 175


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,484,745
Number of Sequences: 5004
Number of extensions: 26482
Number of successful extensions: 54
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)