Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_P08
         (403 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0412 + 21929446-21929713,21931402-21931501,21931755-21931827     44   6e-05
01_06_1051 - 34127251-34127510,34128625-34128868                       32   0.20 
04_04_0468 - 25447774-25447945,25449016-25449130,25449541-254498...    27   5.6  

>01_05_0412 + 21929446-21929713,21931402-21931501,21931755-21931827
          Length = 146

 Score = 43.6 bits (98), Expect = 6e-05
 Identities = 18/35 (51%), Positives = 25/35 (71%)
 Frame = -1

Query: 109 RPNEVKRVRRHGWDFRMSTPNGRRIIMRRLLKGRH 5
           +P+ +KR R HG+  R ST  GR++I RR+ KGRH
Sbjct: 108 QPSTIKRKRTHGFLTRKSTKGGRKVIARRIAKGRH 142


>01_06_1051 - 34127251-34127510,34128625-34128868
          Length = 167

 Score = 31.9 bits (69), Expect = 0.20
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -1

Query: 85  RRHGWDFRMSTPNGRRIIMRRLLKGRHV 2
           R HG+  RM T  GR+++ RR  KGR V
Sbjct: 125 RTHGFRRRMRTTAGRKVLKRRRAKGRRV 152


>04_04_0468 -
           25447774-25447945,25449016-25449130,25449541-25449877,
           25450299-25450628,25451090-25451362,25451471-25451929,
           25452307-25452516,25452617-25452828,25453304-25453404,
           25453584-25454008,25454167-25454360,25454436-25454701,
           25454809-25455015,25455121-25455281,25455741-25455933,
           25456158-25456251,25457238-25457373,25458074-25458202,
           25458315-25458449,25458549-25458613,25459875-25459950,
           25460775-25460885,25461194-25461371,25462340-25462434
          Length = 1557

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 15/46 (32%), Positives = 27/46 (58%)
 Frame = -1

Query: 346 KSQILLMII*KYLTVSSLHCFVSVEKVTVNIMSGLISTILQPLKLI 209
           K  +L+ ++ +Y    ++ C V V+++TV   +  IS ILQ LK +
Sbjct: 328 KFSVLINVLSRYGLQENMKCIVFVKRITV---ARAISNILQNLKCL 370


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,796,466
Number of Sequences: 37544
Number of extensions: 147681
Number of successful extensions: 266
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)