Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_P03
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr 1...    27   2.2  
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    27   2.9  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   8.8  
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa...    25   8.8  
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S...    25   8.8  

>SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 453 IISHGLCSSGIFCLANINYERLHSRSLYINRGMINFI 343
           ++S GL SSGI  L  I    +     YI  GM++ +
Sbjct: 105 LVSAGLISSGIMTLIQIARVHIPKTKYYIGTGMLSVL 141


>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 937

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 51  LKLSYLKEINAKIIINTHEMNQHKIYINLENIYHVEYKN 167
           LKL+  +EIN  II  THE+ Q +I     N + +  +N
Sbjct: 70  LKLAENQEINLSIIDCTHEIEQLEIEPVTSNDWEIAERN 108


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 146  NIFKVYIDFMLVHLVSIYYYF 84
            +IFK      L HL+SIYY+F
Sbjct: 1394 DIFKSMYVLSLDHLLSIYYWF 1414


>SPAC3C7.06c |pit1||serine/threonine protein kinase
           Pit1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 650

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/19 (57%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
 Frame = -1

Query: 155 NMVNIFKVYID-FMLVHLV 102
           N+VNIF +YID F  +H+V
Sbjct: 95  NIVNIFDLYIDQFRCLHIV 113


>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
           Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = +2

Query: 242 TNLLIKLISP-NKFKEGGAAMFEDNNKNHHNLIEGIKFIIPLLIYKLRLCKRS*LILAKQ 418
           T ++IK IS    +  G     E  NKN  N   G+K  +P      R+ K+    L KQ
Sbjct: 69  TPVIIKQISMVRSYSSGDVENPEILNKNESNQSSGVKRAMP-----FRVLKKMKSFLFKQ 123

Query: 419 NIP 427
           N P
Sbjct: 124 NKP 126


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,701,498
Number of Sequences: 5004
Number of extensions: 26378
Number of successful extensions: 60
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)