Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_pT_P02
(733 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha... 208 8e-55
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p... 205 4e-54
SPAC16E8.10c |||mitochondrial ribosomal protein subunit S7|Schiz... 38 0.002
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 29 0.68
SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr ... 27 2.1
SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe... 27 2.8
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 27 3.6
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 27 3.6
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 26 6.4
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual 25 8.4
>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
S5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 203
Score = 208 bits (507), Expect = 8e-55
Identities = 108/167 (64%), Positives = 130/167 (77%)
Frame = -3
Query: 650 AGSVVVETMSLPQAADIPEIKLFGRWSXYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYA 471
A S++ + +SL + IKLF ++ V+V D+SL DYI++ + LPH+AGR+
Sbjct: 2 AASIIPKEVSLDETG---HIKLFNKFPFEGVEVKDISLVDYITIGN--GQPLPHTAGRFQ 56
Query: 470 HKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAII 291
KRFRKA+C IVERLTNSLMM+GRNNGKKL+A RIVKHAFEII LLT +NPLQVLV A+
Sbjct: 57 TKRFRKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEIIALLTDQNPLQVLVDAVA 116
Query: 290 NSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFK 150
GPREDSTRIG AGTVRRQAVDVSPLRRVNQA+ L+ GAREAAF+
Sbjct: 117 ACGPREDSTRIGSAGTVRRQAVDVSPLRRVNQALALITIGAREAAFR 163
Score = 77.8 bits (183), Expect = 1e-15
Identities = 35/41 (85%), Positives = 41/41 (100%)
Frame = -1
Query: 151 RNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSNR 29
RN+K+I+EC+A+E+INAAKGSSNSYAIKKKDELERVAKSNR
Sbjct: 163 RNVKSISECLAEEIINAAKGSSNSYAIKKKDELERVAKSNR 203
>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 205 bits (501), Expect = 4e-54
Identities = 108/163 (66%), Positives = 126/163 (77%), Gaps = 3/163 (1%)
Frame = -3
Query: 629 TMSLPQAADIPE---IKLFGRWSXYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKRF 459
T SL + E IKLF ++ V+V D+SL DYI++ + LPH+AGR+ KRF
Sbjct: 3 TSSLTPGVSLDENGSIKLFNKFPFEGVEVKDISLVDYITIGN--GQPLPHTAGRFQTKRF 60
Query: 458 RKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGP 279
RKA+C IVERLTNSLMM+GRNNGKKL+A RIVKHAFEII LLT +NPLQVLV A+ GP
Sbjct: 61 RKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEIIALLTDQNPLQVLVDAVAACGP 120
Query: 278 REDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFK 150
REDSTRIG AGTVRRQAVDVSPLRRVNQA+ L+ GAREAAF+
Sbjct: 121 REDSTRIGSAGTVRRQAVDVSPLRRVNQALALITIGAREAAFR 163
Score = 77.8 bits (183), Expect = 1e-15
Identities = 35/41 (85%), Positives = 41/41 (100%)
Frame = -1
Query: 151 RNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSNR 29
RN+K+I+EC+A+E+INAAKGSSNSYAIKKKDELERVAKSNR
Sbjct: 163 RNVKSISECLAEEIINAAKGSSNSYAIKKKDELERVAKSNR 203
>SPAC16E8.10c |||mitochondrial ribosomal protein subunit
S7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 37.5 bits (83), Expect = 0.002
Identities = 23/53 (43%), Positives = 28/53 (52%)
Frame = -3
Query: 437 VERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGP 279
V+ L N +M +GKK A +IV A II TGENP+ VL AI P
Sbjct: 126 VQHLVNLIM----RDGKKAKAEKIVATALSIIQKETGENPIDVLKQAIAEISP 174
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 29.1 bits (62), Expect = 0.68
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -2
Query: 378 GRTYCQTCV*NYSLVNWRKPSASTRDCHYQLWT 280
G TYC C L+NW K S S C +L+T
Sbjct: 101 GHTYCYEC-----LLNWLKESKSCPTCRQKLYT 128
>SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 335
Score = 27.5 bits (58), Expect = 2.1
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = -3
Query: 356 AFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRR 204
+ +I HL+TG N + T ++N R D R+ R+ + Q+ D SP +R
Sbjct: 159 SLDIHHLVTGHNADDIAETILMNL-LRGDVARLPRSTEITTQS-DSSPTKR 207
>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 27.1 bits (57), Expect = 2.8
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = -3
Query: 614 QAADIPEIKLFGRWSXYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYA 471
+ ADI + FGR ++++++ + I+V+EKYAK P R A
Sbjct: 7 KVADI-SLAAFGR---KELEIAENEMPGLIAVREKYAKSQPLKGARIA 50
>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 26.6 bits (56), Expect = 3.6
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -2
Query: 102 QLRVHLTPTPSKRRTSWSVLLNPTV 28
Q ++H P P +RR S + L NP++
Sbjct: 124 QQKIHRNPQPRRRRRSTTALPNPSL 148
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 26.6 bits (56), Expect = 3.6
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -1
Query: 286 LDPVKIRLGSVVRVQFVVKPLMFHPCAESTKQSGFCAQV 170
++PV R SVV V +P+ +H +S ++G Q+
Sbjct: 273 IEPVSSRQSSVVNNNSVQQPVAYHAFVQSPTENGTLPQL 311
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -2
Query: 429 PYKLSNDARSEQWQKTDGRTYCQTCV*NYSLVNWRKPSAST 307
PYK+ + + W + G+TY + + + L R+ +AST
Sbjct: 138 PYKIVEHSNGDAWLEARGKTYSPSQIGGFILSKMRE-TAST 177
>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
Length = 613
Score = 25.4 bits (53), Expect = 8.4
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +2
Query: 452 LYGNACVHTCQLNEVNILRTSL*RKCSPAETYQRLAHRXNSICRKA*FQECRRL 613
L N C+ LNE ++ + SL R P++ ++ R +S+ +K+ E R L
Sbjct: 147 LLNNCCIGIANLNEDSVHKISLTRSGKPSQLV-TVSCRHSSVIQKSYGSEKRYL 199
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,967,793
Number of Sequences: 5004
Number of extensions: 60424
Number of successful extensions: 156
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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