Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_O21
         (590 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    28   1.2  
SPCC1442.12 |||CDP-diacylglycerol--serine O-phosphatidyltransfer...    27   1.5  
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc...    25   6.2  

>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
            Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +3

Query: 381  AVVDVEFGFDVIHQIQDVFDDRLLLCLDHXVH-LFDLNFGLGIDLGR 518
            A VDVE    V   I++ F+DR +L + H ++ + D N  L +D G+
Sbjct: 1389 AAVDVETDAIVQRTIRERFNDRTILTIAHRINTVMDSNRILVLDHGK 1435


>SPCC1442.12 |||CDP-diacylglycerol--serine O-phosphatidyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 250

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
 Frame = +3

Query: 33  HLFNIQHRVTSRLLPFLIFFSYLNFKIS*RILNTWNG-TELISHTINYLAKKLHFDIS-- 203
           HL+N  +      +PF +FF +L+ K++      W G + L+   ++ LA  + F +S  
Sbjct: 77  HLWNAMY-----FMPFALFFDFLDGKVA-----RWRGKSSLMGQELDSLADLISFGVSPA 126

Query: 204 FSAPCCFF 227
             A CC F
Sbjct: 127 VFAFCCGF 134


>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1106

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = +3

Query: 6    QSLFSTFLSHLFNIQHRVTSRLLPFLIFFSYLN 104
            +++FST+L+  F  QH V+S   PF  FF Y++
Sbjct: 1068 RAIFSTYLASRFVYQHVVSSD--PF-AFFDYIS 1097


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,000,672
Number of Sequences: 5004
Number of extensions: 35334
Number of successful extensions: 75
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)