Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_O21
         (590 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88173-4|AAK21386.1|  126|Caenorhabditis elegans Vacuolar h atpa...    49   2e-06
Z19155-4|CAA79560.3|  844|Caenorhabditis elegans Hypothetical pr...    27   7.5  
L13200-1|AAA28193.1| 1000|Caenorhabditis elegans Hypothetical pr...    27   7.5  
AC006832-4|AAF39996.1|  485|Caenorhabditis elegans Hypothetical ...    27   7.5  

>U88173-4|AAK21386.1|  126|Caenorhabditis elegans Vacuolar h atpase
           protein 10 protein.
          Length = 126

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 25/56 (44%), Positives = 36/56 (64%)
 Frame = -1

Query: 545 KHMGTREGVAAKIDAETKVKIEEMXXMVQTQKEAVIKDVLNLVYDIKPELHINYRL 378
           +++GT+E + +KI  +T+ +I  M   V   K+AVI  +L LV DIKPELH N  L
Sbjct: 61  QYLGTKEDIESKIRRDTEDQISGMKQSVAGNKQAVIVRLLQLVCDIKPELHHNLTL 116


>Z19155-4|CAA79560.3|  844|Caenorhabditis elegans Hypothetical
           protein F54G8.5 protein.
          Length = 844

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
 Frame = +3

Query: 15  FSTFLS-HLFNIQHRVTSRLLPFLIFFSYLNFKIS*RI-LNTWNGTELISHTINYLAKKL 188
           FS+ ++ HLF I + + SR+  F IF +YL   I   I L      +L++   +Y++K+L
Sbjct: 456 FSSIVAKHLFKILNPLPSRIGVFFIFLAYLFISIHFAIGLPLGLDLKLLAPDDSYVSKEL 515


>L13200-1|AAA28193.1| 1000|Caenorhabditis elegans Hypothetical
           protein ZK1236.3a protein.
          Length = 1000

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 577 SVKGSSKNLKPSTWVPGKVLRPRSMPR 497
           S   SS+ LKP T++P     P SMP+
Sbjct: 14  SKTSSSEELKPKTYIPAYYQPPVSMPK 40


>AC006832-4|AAF39996.1|  485|Caenorhabditis elegans Hypothetical
           protein ZK355.4 protein.
          Length = 485

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +3

Query: 132 TWNGTELISHTINYLAKKLHFDISFSAPCCFFF*LSRLQEN 254
           TW+  ELIS   NY  K +  +I   A  C F+ L +L  N
Sbjct: 324 TWDRVELISLPANYCTKDVG-NIRDWARVCIFYTLEKLPTN 363


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,947,104
Number of Sequences: 27780
Number of extensions: 191834
Number of successful extensions: 412
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)