Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_pT_O20
(706 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces pom... 177 2e-45
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual 31 0.12
SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|ch... 28 1.1
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 27 3.5
SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces p... 27 3.5
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S... 26 4.6
SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr... 26 6.0
SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom... 26 6.0
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c... 25 8.0
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|... 25 8.0
>SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 184
Score = 177 bits (430), Expect = 2e-45
Identities = 80/162 (49%), Positives = 111/162 (68%), Gaps = 3/162 (1%)
Frame = -2
Query: 618 QVYQSTLDRWTPHAKTRWVGSALVMAAFIIRIITKQGWYIVTYALGIYHLNLFIAFLTPK 439
++Y+ +DR P+ RW+ + ++A F IRI+ +GWYIV Y L IY LNLF+AFLTPK
Sbjct: 20 RLYRHWVDRTIPYTTYRWLTVSGLIALFFIRILLVRGWYIVCYTLAIYLLNLFLAFLTPK 79
Query: 438 IDPAMDL---DDDENGPALPTRASEEFRPFIRRLPEFKFWLSVTKSTLIAFCCTFVDAFN 268
DP+++ D++ LPT +EFRPFIRRLPEFKFW S ++TL A +F F+
Sbjct: 80 FDPSVEQAMKDEEIEEGVLPTSKDDEFRPFIRRLPEFKFWYSSMRATLFALVASFFRIFD 139
Query: 267 IPVFWPILVMYFITLFCITMKRQIKHMIKYRYLPFTHNKPKY 142
+PVFWPILV+Y++ L +RQI+HM+KYRY+PF K K+
Sbjct: 140 VPVFWPILVVYYLVLSFFCFRRQIQHMLKYRYVPFDIGKKKF 181
>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
Length = 426
Score = 31.5 bits (68), Expect = 0.12
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +2
Query: 41 VSCFISLTFHPVACSSLHLL 100
VSCF S+ FH +AC +L+LL
Sbjct: 135 VSCFASIFFHAIACYALYLL 154
>SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 609
Score = 28.3 bits (60), Expect = 1.1
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -2
Query: 441 KIDPAMDLDDDENGPALPTRASEEFRPFIRRLPEFKFWLSVTKSTLIA 298
K +M DDD+ R S+ + ++R++ F FW S +LIA
Sbjct: 353 KTHASMKDDDDKPTNFHDIRLSDLYAEYLRQVATFDFWTSKEYESLIA 400
>SPBP19A11.04c |mor2|cps12|morphogenesis protein
Mor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2196
Score = 26.6 bits (56), Expect = 3.5
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = -3
Query: 701 SXI*WTEMIYLLKLQEKEYCLKVGHEYRRFIRVH*TDGPLTQ 576
S I WT + L + E E+ V Y F+RV TD Q
Sbjct: 1653 SQILWTAIACLTTIHEDEFIESVKIAYAYFLRVEETDSATQQ 1694
>SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 285
Score = 26.6 bits (56), Expect = 3.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 392 YLPELVKNLDHSLDDYQNSSFG 327
+LP NLD S+DD+Q + G
Sbjct: 106 FLPTFEMNLDESIDDFQLTGLG 127
>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1052
Score = 26.2 bits (55), Expect = 4.6
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = +3
Query: 18 FLHTRIQQSLASFHSLSTQSLAVPCICXXXXXXXXXXNLHFYTLV 152
FL+T + SL +FH LS + L P N H L+
Sbjct: 753 FLNTSKRVSLENFHRLSVEDLRSPSFVYKNGVDCNFDNTHLAKLI 797
>SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 311
Score = 25.8 bits (54), Expect = 6.0
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +2
Query: 2 LYKTVFFTYSHPTVSCF 52
++ T+F T SHP++ CF
Sbjct: 46 IFFTIFSTMSHPSLQCF 62
>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 350
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -1
Query: 505 VYCHICVGYLPFKLVHCIL 449
VYCH C Y P + HC L
Sbjct: 182 VYCHTCHLYRPPRASHCHL 200
>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 329
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = -2
Query: 642 SQGWTRISQVYQSTLDRWTPH-AKTRWVGSALV 547
++GW+ + Y RW PH + W+ LV
Sbjct: 297 AEGWSSDEEQYAMKNRRWNPHMGQYEWIEDFLV 329
>SPAC3A12.05c |taf2||TATA-binding protein associated factor
Taf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1174
Score = 25.4 bits (53), Expect = 8.0
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = -1
Query: 307 FNSFLLYFCGCFQYSSILAYSSYVFHNIILYYYEETNQAYD 185
FNSF L F + I S + N ILY + +Q YD
Sbjct: 340 FNSFKLCFVDETNFPIISTPSLVISSNSILYPKDSLDQIYD 380
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,961,030
Number of Sequences: 5004
Number of extensions: 62324
Number of successful extensions: 207
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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