Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_pT_O20
(706 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0042 + 317586-317640,318128-318185,318799-319236,320426-32... 189 2e-48
08_02_0134 - 13021294-13021350,13021478-13021658,13022383-130224... 86 2e-17
06_03_1339 + 29445324-29445395,29445487-29445598,29445673-294457... 85 5e-17
05_05_0276 + 23771233-23771268,23773552-23773897,23774425-237745... 31 1.2
08_01_0892 - 8778097-8778236,8778390-8778486,8778568-8778747,877... 28 8.3
07_03_1384 + 26177053-26177227,26178754-26178823,26179427-261794... 28 8.3
>01_01_0042 +
317586-317640,318128-318185,318799-319236,320426-320467,
320468-320648,320838-320867
Length = 267
Score = 189 bits (461), Expect = 2e-48
Identities = 95/194 (48%), Positives = 123/194 (63%), Gaps = 14/194 (7%)
Frame = -2
Query: 690 MDGNDLSSEITRKGILSQGWTRISQVYQSTLDRWTPHAKTRWVGSALVMAAFIIRIITKQ 511
MDG S ++ T S+ +Q LDR TPHA RW+G+ V A + +R+ Q
Sbjct: 64 MDGAADSGTAGAAAAAAKWRTDASRAFQYYLDRSTPHATGRWIGTLAVAAIYALRVYLVQ 123
Query: 510 GWYIVTYALGIYHLNLFIAFLTPKIDPAMDLDDDENGPALPTRASEEFRPFIRRLPEFKF 331
G+YIVTY LGIY LNL I FL+P +DP +GPALPTR S+EF+PFIRRLPEFKF
Sbjct: 124 GFYIVTYGLGIYLLNLLIGFLSPMVDPEAHAAASSDGPALPTRGSDEFKPFIRRLPEFKF 183
Query: 330 WL--------------SVTKSTLIAFCCTFVDAFNIPVFWPILVMYFITLFCITMKRQIK 193
+ ++TK+ LIAF TF F++PVFWPIL+ Y++ LF +TMKRQI
Sbjct: 184 CIHTILLTFICLAFRYAITKAFLIAFVMTFFSVFDVPVFWPILLCYWVVLFVLTMKRQIV 243
Query: 192 HMIKYRYLPFTHNK 151
HMIKY+Y+PF+ K
Sbjct: 244 HMIKYKYVPFSVGK 257
>08_02_0134 -
13021294-13021350,13021478-13021658,13022383-13022433,
13025134-13025187,13026154-13026248,13026565-13026888
Length = 253
Score = 86.2 bits (204), Expect = 2e-17
Identities = 35/61 (57%), Positives = 46/61 (75%)
Frame = -2
Query: 324 SVTKSTLIAFCCTFVDAFNIPVFWPILVMYFITLFCITMKRQIKHMIKYRYLPFTHNKPK 145
S+ K+ IAF TF F++PVFWPIL+ Y++ LF +TMKRQI HMIKYRY+PF+ K +
Sbjct: 177 SIVKAFCIAFVLTFFSVFDVPVFWPILLFYWVVLFTVTMKRQILHMIKYRYVPFSFGKQR 236
Query: 144 Y 142
Y
Sbjct: 237 Y 237
Score = 77.0 bits (181), Expect = 1e-14
Identities = 36/64 (56%), Positives = 46/64 (71%)
Frame = -2
Query: 621 SQVYQSTLDRWTPHAKTRWVGSALVMAAFIIRIITKQGWYIVTYALGIYHLNLFIAFLTP 442
S+ +Q LDR TPH RW+ A V AA+ +R+ G+YIVTYALGIY LNL IAFL+P
Sbjct: 41 SRRFQHLLDRSTPHVGRRWLAFAGVAAAYALRVWFAGGYYIVTYALGIYILNLLIAFLSP 100
Query: 441 KIDP 430
++DP
Sbjct: 101 QVDP 104
>06_03_1339 +
29445324-29445395,29445487-29445598,29445673-29445756,
29446156-29446182,29446879-29446966,29447070-29447151,
29447414-29447434,29448412-29448605,29449419-29449560,
29449805-29449889,29450123-29450250,29450940-29451032,
29451095-29451327,29453384-29453564,29454122-29454169
Length = 529
Score = 85.0 bits (201), Expect = 5e-17
Identities = 34/61 (55%), Positives = 47/61 (77%)
Frame = -2
Query: 324 SVTKSTLIAFCCTFVDAFNIPVFWPILVMYFITLFCITMKRQIKHMIKYRYLPFTHNKPK 145
++TK+ +AF TF F++PVFWPIL+ Y++ LF +TMKRQI HMIKY+Y+PF+ K K
Sbjct: 456 AITKAFCVAFLMTFFSVFDVPVFWPILLCYWVVLFVLTMKRQIVHMIKYKYVPFSIGKQK 515
Query: 144 Y 142
Y
Sbjct: 516 Y 516
>05_05_0276 +
23771233-23771268,23773552-23773897,23774425-23774541,
23774712-23774810,23774949-23775016,23775107-23775181,
23775386-23775931,23776040-23776092,23776163-23776204,
23776314-23776458,23776541-23776651,23777496-23777921,
23778116-23778373
Length = 773
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -2
Query: 660 TRKGILSQGWTRISQVYQSTLDRWTPHAKTRWVGSALVM 544
T+ G RI++ Y+S+ WTP A +G ALV+
Sbjct: 532 TQNPATQNGSVRINKWYESSARAWTPSAAASSIGQALVV 570
>08_01_0892 -
8778097-8778236,8778390-8778486,8778568-8778747,
8779138-8779247,8781153-8781294,8782298-8782686,
8782752-8782834,8783524-8785244,8785894-8786040,
8786121-8786264,8786669-8786741,8787413-8787633
Length = 1148
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +1
Query: 28 LASNSLLLHFTHFPPSRLQFPAFAXLSSVHCDCRICISILWFVV 159
+AS ++L+HF H F + C IC ILWF++
Sbjct: 815 IASETMLVHFVHV------FSFVCVPVNTTCSLSICREILWFLI 852
>07_03_1384 +
26177053-26177227,26178754-26178823,26179427-26179469,
26179888-26179965,26180010-26180027,26180103-26180187,
26180273-26180355,26180489-26180546,26181258-26181368,
26181769-26181826,26182005-26182101,26182585-26182620,
26183107-26183137,26183993-26184046,26184159-26184301,
26184411-26184560,26185084-26185317,26185450-26185509,
26185974-26186204,26186829-26186981
Length = 655
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -1
Query: 658 KKRNIVSRLDTNIAGLSEYIRQMDPSRKDTVGWK 557
KKR +L T++ G EY DP KD W+
Sbjct: 615 KKRRPRPKLSTSLFGQPEYPADADPEPKDARQWE 648
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,960,496
Number of Sequences: 37544
Number of extensions: 355998
Number of successful extensions: 867
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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