Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_O20
         (706 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54281-5|CAA91047.1|  191|Caenorhabditis elegans Hypothetical pr...   224   6e-59
Z78420-6|CAB01711.2| 1243|Caenorhabditis elegans Hypothetical pr...    31   0.80 
Z78418-6|CAB01699.2| 1243|Caenorhabditis elegans Hypothetical pr...    31   0.80 
AC024831-7|AAY86310.1|  711|Caenorhabditis elegans Hypothetical ...    31   0.80 
AC006708-19|AAF60423.3|  588|Caenorhabditis elegans Mtm (myotubu...    31   1.1  
Z48795-7|CAA88731.1|  347|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z49128-4|CAA88954.1|  541|Caenorhabditis elegans Hypothetical pr...    28   5.7  
AF067940-8|AAC19200.1|  518|Caenorhabditis elegans Hypothetical ...    28   5.7  
AF100305-8|AAC68919.1|  179|Caenorhabditis elegans Hypothetical ...    27   9.9  
AF099915-1|AAC68771.1|  460|Caenorhabditis elegans Hypothetical ...    27   9.9  

>Z54281-5|CAA91047.1|  191|Caenorhabditis elegans Hypothetical
           protein F46C5.8 protein.
          Length = 191

 Score =  224 bits (547), Expect = 6e-59
 Identities = 99/178 (55%), Positives = 130/178 (73%)
 Frame = -2

Query: 657 RKGILSQGWTRISQVYQSTLDRWTPHAKTRWVGSALVMAAFIIRIITKQGWYIVTYALGI 478
           R G+ S+ +  +   YQ  LDR TPH   RWV + + +  F  RII  QG+YIV YA+GI
Sbjct: 8   RPGVTSRFFHSLEVKYQYYLDRLTPHTAFRWVIALISLVFFASRIILLQGFYIVAYAVGI 67

Query: 477 YHLNLFIAFLTPKIDPAMDLDDDENGPALPTRASEEFRPFIRRLPEFKFWLSVTKSTLIA 298
           Y+LNLF+ FLTP IDPA++ +D+++GP LP++ ++EFRPF+RRLPEFKFW S  K+TLIA
Sbjct: 68  YYLNLFLLFLTPSIDPALEFEDEDDGPVLPSKTNDEFRPFMRRLPEFKFWHSFMKATLIA 127

Query: 297 FCCTFVDAFNIPVFWPILVMYFITLFCITMKRQIKHMIKYRYLPFTHNKPKYRNADST 124
             CTF + F++PVFWPILVMYF  L  +T+KRQI HMIKYRY+PFT  KP+    + T
Sbjct: 128 ITCTFFEFFDVPVFWPILVMYFFILTFLTLKRQIMHMIKYRYIPFTVGKPRMAGKEDT 185


>Z78420-6|CAB01711.2| 1243|Caenorhabditis elegans Hypothetical
           protein F45H11.4 protein.
          Length = 1243

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = -2

Query: 306 LIAFCCTFVDAFNIPVFWPILVMYFITLFCITMKRQIKHMIKYRYLPFTHNKP 148
           LI  C T   +F IP FW   ++   TL+    +   ++  + +++ FT ++P
Sbjct: 728 LILECDTETKSFLIPFFWDFFLITLCTLYAFKTRNLPENFNEAKFIGFTISQP 780


>Z78418-6|CAB01699.2| 1243|Caenorhabditis elegans Hypothetical
           protein F45H11.4 protein.
          Length = 1243

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = -2

Query: 306 LIAFCCTFVDAFNIPVFWPILVMYFITLFCITMKRQIKHMIKYRYLPFTHNKP 148
           LI  C T   +F IP FW   ++   TL+    +   ++  + +++ FT ++P
Sbjct: 728 LILECDTETKSFLIPFFWDFFLITLCTLYAFKTRNLPENFNEAKFIGFTISQP 780


>AC024831-7|AAY86310.1|  711|Caenorhabditis elegans Hypothetical
           protein Y55F3C.9 protein.
          Length = 711

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = -1

Query: 625 NIAGLSEYIRQMDPSRKDTVGWKCLGHGCIYYPHNY*TRMVYCH-ICVGYLPFKLVHC 455
           N     EY+ ++  +R   + W  L    I+YP  +  +M+  H +C+G++ F +VHC
Sbjct: 80  NFCAQREYVPRLIFNRISILIWGSLW---IFYPLIHSDKMLLIHSVCLGFIIFIVVHC 134


>AC006708-19|AAF60423.3|  588|Caenorhabditis elegans Mtm
           (myotubularin) family protein 1 protein.
          Length = 588

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
 Frame = -2

Query: 555 ALVMAAFIIRIITKQGWYIVTYALGIYHLNLFIAFLTPKIDPAMDLDDDENGP---ALPT 385
           A V AA   R++ K GW I +       L +  + L  ++D   D    E  P    +PT
Sbjct: 150 ASVHAAETPRLM-KDGWKIYSAEKEYERLGIPNSRLWKEVDINKDYKFSETYPRTFVIPT 208

Query: 384 RASEEFRPFIRRLPEFK 334
            + EE +PF+++L EF+
Sbjct: 209 VSWEEGKPFVKKLGEFR 225


>Z48795-7|CAA88731.1|  347|Caenorhabditis elegans Hypothetical
           protein R05H5.1 protein.
          Length = 347

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
 Frame = -1

Query: 313 KHFNSFLLYFCGCFQYSSILAYSSYVFHNIILYYYE----ETNQAYDQIQIS-AIYT 158
           K+ + +  YFC CF   + LA+S ++     +Y Y     ET  A D I+ S A+Y+
Sbjct: 98  KYVSPWFCYFCHCFMCHA-LAHSQWILLGSFIYRYRVLTGETPTAKDLIRNSVALYS 153


>Z49128-4|CAA88954.1|  541|Caenorhabditis elegans Hypothetical
           protein M03C11.4 protein.
          Length = 541

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 666 EITRKGILSQGWTRISQVYQSTLDRWTPH 580
           E T+   LSQ + R+ + YQ T+DR   H
Sbjct: 509 EETKFSTLSQNYDRLMEAYQKTIDRIEQH 537


>AF067940-8|AAC19200.1|  518|Caenorhabditis elegans Hypothetical
           protein F36F12.1 protein.
          Length = 518

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = -1

Query: 307 FNSFLLYFCGCFQYSSILAYSSYVFHNIILYYYEETNQAYD-QIQISAIYTQ 155
           F   LL +    Q+   +     +F    L YYEE  + Y+   QISA+Y Q
Sbjct: 255 FTDCLLQYKEAAQFIGFMEIEDLLFPLNTLTYYEEFEREYEGSYQISALYYQ 306


>AF100305-8|AAC68919.1|  179|Caenorhabditis elegans Hypothetical
           protein W04B5.6 protein.
          Length = 179

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -2

Query: 312 STLIAFCCTFVDAFNIPVFWPILVMYFITLFCIT 211
           S L  + C +V       FWP L   F+ LF ++
Sbjct: 116 SVLFVYACIYVKYCKTKNFWPNLFQIFLELFTLS 149


>AF099915-1|AAC68771.1|  460|Caenorhabditis elegans Hypothetical
           protein E02H9.6 protein.
          Length = 460

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -2

Query: 312 STLIAFCCTFVDAFNIPVFWPILVMYFITLFCIT 211
           S L  + C +V       FWP L   F+ LF ++
Sbjct: 116 SVLFVYACIYVKYCKTKNFWPNLFQIFLELFTLS 149


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,279,433
Number of Sequences: 27780
Number of extensions: 345179
Number of successful extensions: 1064
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)