Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_O20
         (706 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              23   2.1  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    23   3.7  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   4.9  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.6  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    21   8.6  

>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 8/31 (25%), Positives = 18/31 (58%)
 Frame = -2

Query: 93  CRELQATGWKVSEMKQETVGCEYVKNTVLYN 1
           CR + A     +E+ +E++   Y+ N ++Y+
Sbjct: 123 CRNIGAVPKMATELYEESLFVPYITNFIIYS 153


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 5   YKTVFFTYSHPTVSCFISL 61
           Y T+FF Y HP+ +  + L
Sbjct: 131 YGTLFFIYVHPSATFSLDL 149


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = -2

Query: 432 PAMDLDDDENGPALPTRASEEFRP 361
           P    DDD  GPA P    E+  P
Sbjct: 479 PLPGADDDLFGPASPAYVHEDVSP 502


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -1

Query: 499 CHICVGYLPFKLVHCILNAEN*SCYGFR 416
           C I V Y PF    C+L   + +  GF+
Sbjct: 153 CEIDVEYFPFDEQTCVLKFGSWTYDGFK 180


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/38 (23%), Positives = 17/38 (44%)
 Frame = +1

Query: 70  PSRLQFPAFAXLSSVHCDCRICISILWFVVCKWQISVF 183
           P   +F      + + C CR C S+  + +   +I+ F
Sbjct: 97  PGEKKFRKVITKAPLECMCRPCTSVEEYAIIPQEIAGF 134


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,050
Number of Sequences: 438
Number of extensions: 4507
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)