Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_O15
         (742 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch...    99   8e-22
SPAC806.02c |||Par A family ATPase iron cluster assembly protein...    29   0.70 
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo...    27   2.8  
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch...    26   6.5  
SPBPB2B2.05 |||GMP synthase [glutamine-hydrolyzing] |Schizosacch...    26   6.5  
SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase |Schi...    26   6.5  
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi...    25   8.6  
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa...    25   8.6  

>SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 425

 Score = 98.7 bits (235), Expect = 8e-22
 Identities = 64/209 (30%), Positives = 99/209 (47%), Gaps = 7/209 (3%)
 Frame = -3

Query: 740 FRAXHLKVHKVEAPSGDMGGSFSHEWQLAATSGEDQIKVCPSC---SHAALLD----HEG 582
           F+   L    V+A +G++GG+ SHE+      GED I  CPSC   +++ +LD       
Sbjct: 190 FKEVGLPFVMVKAATGNIGGNLSHEFHYRHPVGEDVIYTCPSCHYSTNSEMLDLSKTSSD 249

Query: 581 ARCQSCGKDAEILQSIEVGHTFILGTKYSEALETTYCPPSGPPLPIIMSCYGIGITRXXX 402
             C +C        +IEVGH F LG  YS     T    +   + + M CYGIG++R   
Sbjct: 250 ISCPNCNDQLTSTTAIEVGHAFYLGKIYSSKFNATVEVKNKQEV-LHMGCYGIGVSRLIA 308

Query: 401 XXXXXXXXXXXLRWPKAIAPYSAIIIGPKEGSKEWNDHGMDQVKLVYDALNSVPALRSDV 222
                      L WP +IAP+  +++         +D+ +   + VYDA  +V     +V
Sbjct: 309 AVAHVTKDAKGLVWPSSIAPWKVLVV-------PTSDNHIQSAETVYDATANVVGF-DNV 360

Query: 221 LVDDRHGLTIGKRLLMADKMGYPIVIACG 135
           L++DR     G ++  A+ +GYP VI  G
Sbjct: 361 LLEDRQNRAFGYKMRDAELIGYPFVIVVG 389


>SPAC806.02c |||Par A family ATPase iron cluster assembly
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 608

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
 Frame = +1

Query: 532 SILCKISASFPQLWHLA--PSWSNSAACEQDGHTFIW---SSPEVAASCHSCEKLPP 687
           ++ C++      +W LA  P+ +  A+ + DG+ F+W   SS E  A+  S   L P
Sbjct: 458 ALTCQLQGHTNTVWALAFSPNGNTLASADNDGNVFLWIKISSNEDVATIDSTNILRP 514


>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
           component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 536

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = -3

Query: 632 IKVCPSCSHAALLDHEGARCQSCGK 558
           +++CP C+++  L      C+ CG+
Sbjct: 278 VQICPECNNSFTLTRRRRHCRLCGR 302


>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 891

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 90  VDGHFVPRGIATRFFTARYYYRISHFISHEQSLSDGE 200
           VDGH  PR  + + + A+  ++ SHF +  + +   E
Sbjct: 46  VDGHKKPRSESRKKYDAKKQHQSSHFATPVKGVESSE 82


>SPBPB2B2.05 |||GMP synthase [glutamine-hydrolyzing]
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 237

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 209 GRRPAHRTSEPVHYSKHRRPT*PGPCRD 292
           G R  HR S+P HY  H+    PG  ++
Sbjct: 106 GFRDIHRPSKPRHYLAHKVMAKPGKLKN 133


>SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 18/62 (29%), Positives = 26/62 (41%)
 Frame = +1

Query: 535 ILCKISASFPQLWHLAPSWSNSAACEQDGHTFIWSSPEVAASCHSCEKLPPISPDGASTL 714
           +LC +S     L+H A ++      E +GH  I  S    +   S E L P   +   TL
Sbjct: 361 VLC-VSPGLKHLYHAAQAYDVGVFFEANGHGTILVSHAALSKIISHEVLSPAQFNALKTL 419

Query: 715 CT 720
            T
Sbjct: 420 KT 421


>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
           Air1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +1

Query: 628 FIWSSPEVAASCHSCEKLPPISPDGASTLCT 720
           +  S P  +  CH+C+    IS D    LCT
Sbjct: 78  YFGSDPSESIVCHNCKGNGHISKDCPHVLCT 108


>SPAC19E9.02 |fin1||serine/threonine protein kinase
           Fin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 180 QSLSDGEAVAVVDQHIGPQSRYTIQSIVDQLNLV 281
           Q L DG  +A  + H G  +R   Q I D++N++
Sbjct: 22  QRLKDGALLAQKEIHFGNITRQEKQYIADEVNIL 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,154,782
Number of Sequences: 5004
Number of extensions: 66146
Number of successful extensions: 193
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)