Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_O15
         (742 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82060-7|CAB04884.1|  454|Caenorhabditis elegans Hypothetical pr...   105   2e-23
Z82060-9|CAJ85764.1|  166|Caenorhabditis elegans Hypothetical pr...    47   1e-05
Z82060-8|CAJ85763.1|  114|Caenorhabditis elegans Hypothetical pr...    32   0.37 
AC092690-1|AAK73856.2|  427|Caenorhabditis elegans Hypothetical ...    31   0.65 
U23147-7|AAC46691.1|  596|Caenorhabditis elegans Rapsyn protein ...    31   1.1  
U09415-1|AAA82164.1|  655|Caenorhabditis elegans Ceprp21 protein.      30   1.5  
AF106576-5|AAC78179.1|  655|Caenorhabditis elegans Yeast prp (sp...    30   1.5  
U64836-8|AAG24063.1|  339|Caenorhabditis elegans Serpentine rece...    29   2.6  
U80438-1|AAB37631.1|  400|Caenorhabditis elegans Hypothetical pr...    28   8.0  

>Z82060-7|CAB04884.1|  454|Caenorhabditis elegans Hypothetical
           protein T27F6.5a protein.
          Length = 454

 Score =  105 bits (253), Expect = 2e-23
 Identities = 71/204 (34%), Positives = 106/204 (51%), Gaps = 6/204 (2%)
 Frame = -3

Query: 719 VHKVEAPSGDMGGSFSHEWQLAATSGEDQIKVCPSCSHAALLDHEG-ARCQSC----GKD 555
           V KVEA SG  GG  SHE+ L ++  ED +  C +C +    +  G A+C+ C     K 
Sbjct: 196 VIKVEADSGVHGGHISHEYHLKSSLEEDFVNFCENCKNHNKFEGPGPAKCEKCAENSSKT 255

Query: 554 AEILQSIEVGHTFILGTKYSEALETTYCPPSGPPLPIIMSCYGIGITR-XXXXXXXXXXX 378
            + + S+E+ HTF LGTKYSEAL   +    G PL   M C+GIG+TR            
Sbjct: 256 VQKIPSVEIAHTFHLGTKYSEALGAKF---QGKPLD--MCCFGIGVTRLLPAAIDLLSVS 310

Query: 377 XXXLRWPKAIAPYSAIIIGPKEGSKEWNDHGMDQVKLVYDALNSVPALRSDVLVDDRHGL 198
              LR P+AIAP+ A+II  K          M  V +   + ++   L+  +L+DDR  +
Sbjct: 311 DKALRLPRAIAPFDAVIIVKKS--------LMSNVIVEMASSSASRYLKGGILLDDRVEM 362

Query: 197 TIGKRLLMADKMGYPIVIACGKES 126
           + GKR+  A+++G P ++    E+
Sbjct: 363 SAGKRIHDANRLGIPFILVIANET 386


>Z82060-9|CAJ85764.1|  166|Caenorhabditis elegans Hypothetical
           protein T27F6.5c protein.
          Length = 166

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 1/106 (0%)
 Frame = -3

Query: 440 MSCYGIGITRXXXXXXXXXXXXXXL-RWPKAIAPYSAIIIGPKEGSKEWNDHGMDQVKLV 264
           M C+GIG+TR                R P+AIAP+ A+II  K          M  V + 
Sbjct: 1   MCCFGIGVTRLLPAAIDLLSVSDKALRLPRAIAPFDAVIIVKKSL--------MSNVIVE 52

Query: 263 YDALNSVPALRSDVLVDDRHGLTIGKRLLMADKMGYPIVIACGKES 126
             + ++   L+  +L+DDR  ++ GKR+  A+++G P ++    E+
Sbjct: 53  MASSSASRYLKGGILLDDRVEMSAGKRIHDANRLGIPFILVIANET 98


>Z82060-8|CAJ85763.1|  114|Caenorhabditis elegans Hypothetical
           protein T27F6.5b protein.
          Length = 114

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = -3

Query: 236 LRSDVLVDDRHGLTIGKRLLMADKMGYPIVIACGKES 126
           L+  +L+DDR  ++ GKR+  A+++G P ++    E+
Sbjct: 10  LKGGILLDDRVEMSAGKRIHDANRLGIPFILVIANET 46


>AC092690-1|AAK73856.2|  427|Caenorhabditis elegans Hypothetical
           protein BE0003N10.2 protein.
          Length = 427

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
 Frame = -3

Query: 596 LDHEGARCQSCGKDAEILQSIEVGHTFILGTKYSEAL----ETTYCPPSGPPL-PIIMSC 432
           L H+G RC+ CG  A    S +  H  +  +KY + +     TT C   G  L PI+  C
Sbjct: 195 LVHQGMRCEDCGFAAHKKCSEKTLHDCVPDSKYVKRMFGVDITTLCMAHGADLPPIVPLC 254

Query: 431 YG 426
            G
Sbjct: 255 IG 256


>U23147-7|AAC46691.1|  596|Caenorhabditis elegans Rapsyn protein 1
           protein.
          Length = 596

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/65 (24%), Positives = 28/65 (43%)
 Frame = -3

Query: 614 CSHAALLDHEGARCQSCGKDAEILQSIEVGHTFILGTKYSEALETTYCPPSGPPLPIIMS 435
           C H  LL      C  C   A +  +I +  + I  T   ++  T++ PP G   P++ +
Sbjct: 401 CLHTYLLQRTDQTCPKCRCRAVLSDNISI-RSSIASTIDVQSPSTSFAPPGGVATPLVSA 459

Query: 434 CYGIG 420
              +G
Sbjct: 460 AAELG 464


>U09415-1|AAA82164.1|  655|Caenorhabditis elegans Ceprp21 protein.
          Length = 655

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -3

Query: 293 DHGMDQVKLVYDALNSVPALRSDVLVDDRHGLTIGKRLLMAD 168
           +HGMD   + +    + P       + DR+G+ +GK+ LM+D
Sbjct: 581 EHGMDGSIVQFTIQVTAPMSELKQQIQDRYGMPVGKQKLMSD 622


>AF106576-5|AAC78179.1|  655|Caenorhabditis elegans Yeast prp
           (splicing factor) relatedprotein 21 protein.
          Length = 655

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -3

Query: 293 DHGMDQVKLVYDALNSVPALRSDVLVDDRHGLTIGKRLLMAD 168
           +HGMD   + +    + P       + DR+G+ +GK+ LM+D
Sbjct: 581 EHGMDGSIVQFTIQVTAPMSELKQQIQDRYGMPVGKQKLMSD 622


>U64836-8|AAG24063.1|  339|Caenorhabditis elegans Serpentine
           receptor, class h protein187 protein.
          Length = 339

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/34 (35%), Positives = 23/34 (67%)
 Frame = +2

Query: 620 DTLLSGLRQRSPRAATRVRSFLPYRPTELRLCAL 721
           DTLL  +++RS R+ + V++    + TE+++C L
Sbjct: 306 DTLLGLMKRRSSRSQSTVQNIFSMKVTEMKVCYL 339


>U80438-1|AAB37631.1|  400|Caenorhabditis elegans Hypothetical
           protein T19B4.5 protein.
          Length = 400

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 168 ISHEQSLSDGEAVAVVDQHIGPQSR 242
           ++HE+ + DG    VVD H  PQ R
Sbjct: 27  VAHEEIVDDGSTEMVVDHHHHPQLR 51


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,085,142
Number of Sequences: 27780
Number of extensions: 412751
Number of successful extensions: 1356
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1349
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)