Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_O14
         (768 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.02 |ubc4||ubiquitin conjugating enzyme Ubc4|Schizosaccha...    30   0.32 
SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme Ubc13|Sch...    29   0.55 
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p...    27   3.0  
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar...    27   3.0  
SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster...    27   3.9  

>SPBC119.02 |ubc4||ubiquitin conjugating enzyme
           Ubc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 147

 Score = 30.3 bits (65), Expect = 0.32
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -3

Query: 643 GAICMELLTKQGWSSAYTVEAVIMQIAATPGEGQGSDPV 527
           G+IC+++L  Q WS A T+  V++ I +   +    DP+
Sbjct: 82  GSICLDILRDQ-WSPALTISKVLLSICSLLTDPNPDDPL 119


>SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme
           Ubc13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 148

 Score = 29.5 bits (63), Expect = 0.55
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 643 GAICMELLTKQGWSSAYTVEAVIMQIAATPGEGQGSDPV 527
           G IC+  L K+ WS A  +  V++ I A  G     DP+
Sbjct: 83  GRICLSTL-KKDWSPALQIRTVLLSIQALMGAPNPDDPL 120


>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +3

Query: 189 APHLIQN-ITTYNNTRTILAKRPFIFSTYIKTSRAYRQT 302
           A  L+Q  + TYN   TIL  RP+ +  ++  S   RQ+
Sbjct: 714 AQRLLQKEVITYNEVETILGPRPYAYK-HLNISELMRQS 751


>SPAC23A1.04c |mnl1||alpha mannosidase-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -2

Query: 710 SIRXAFCACCLSYNLRRLCISRRCDMYGAINEARLV 603
           S+   FC C +      LCI +   + GAIN AR+V
Sbjct: 3   SLHSIFCVCLIL-----LCIFKENSIVGAINSARMV 33


>SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 480

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +3

Query: 405 THPLSEV*TSHFSHVSEQDI*SSAVHGPDCTESVKQLWWH*TGSEPCPSPGVAAI 569
           T  LS + +SHF + S+  + S+  H  DC+ +   L  +  GS P  +  + +I
Sbjct: 81  TPSLSPMTSSHFPYASDGTLISATNHCDDCSYNPHYLPVNSNGSSPSHTSSLDSI 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,162,759
Number of Sequences: 5004
Number of extensions: 64842
Number of successful extensions: 176
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)