Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_pT_O14
(768 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0561 + 4905107-4905272,4905945-4906033,4906832-4906960 33 0.25
01_01_1187 + 9444742-9445317 33 0.25
09_02_0285 + 6894899-6895114,6896197-6896422,6896889-6896992,689... 31 0.77
06_03_0198 - 17797574-17797717,17797995-17798099,17798509-177986... 31 0.77
04_04_1516 - 34122205-34122348,34122430-34122534,34122878-341230... 31 1.0
02_02_0339 + 9115297-9115366,9116280-9116407,9117537-9117641,911... 31 1.0
01_06_1150 + 34910941-34911010,34911611-34911738,34912025-349121... 31 1.0
02_01_0154 + 1078561-1078630,1078758-1078885,1079016-1079120,107... 30 1.8
01_06_0129 - 26770543-26770720,26774592-26774719,26774829-267749... 30 1.8
01_06_1488 + 37716986-37717076,37717424-37717558,37717755-377178... 30 2.3
08_02_1093 - 24271826-24273427 29 4.1
10_08_0755 - 20329127-20329189,20329276-20329389,20329465-203296... 29 5.4
03_01_0159 + 1298002-1298070,1298181-1298264,1300354-1300506,130... 29 5.4
06_01_0878 + 6735266-6735340,6735946-6736041,6738610-6738720,673... 28 7.1
04_04_1142 + 31194801-31194952,31195548-31196037,31196463-311965... 28 9.4
03_02_0493 - 8866685-8866888,8866989-8867059,8867143-8867416,886... 28 9.4
>05_01_0561 + 4905107-4905272,4905945-4906033,4906832-4906960
Length = 127
Score = 33.1 bits (72), Expect = 0.25
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -3
Query: 661 GYVLVGGAICMELLTKQGWSSAYTVEAVIMQI 566
GYV G+IC+++L Q WS Y V A++ I
Sbjct: 54 GYVYADGSICLDILQNQ-WSPIYDVAAILTSI 84
>01_01_1187 + 9444742-9445317
Length = 191
Score = 33.1 bits (72), Expect = 0.25
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = -3
Query: 643 GAICMELLTKQGWSSAYTVEAVIMQIAATPGEGQGSDPV 527
G IC+++L + WSSAY V +++ I + GE P+
Sbjct: 128 GNICLDILQDK-WSSAYDVRTILLSIQSLLGEPNNDSPL 165
>09_02_0285 +
6894899-6895114,6896197-6896422,6896889-6896992,
6897121-6897239,6897445-6897634
Length = 284
Score = 31.5 bits (68), Expect = 0.77
Identities = 13/39 (33%), Positives = 25/39 (64%)
Frame = -3
Query: 643 GAICMELLTKQGWSSAYTVEAVIMQIAATPGEGQGSDPV 527
G+IC+++L +Q WS A T+ V++ I++ + DP+
Sbjct: 82 GSICLDILKEQ-WSPALTISKVLLSISSLLTDPNPDDPL 119
>06_03_0198 -
17797574-17797717,17797995-17798099,17798509-17798636,
17799444-17799513
Length = 148
Score = 31.5 bits (68), Expect = 0.77
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = -3
Query: 643 GAICMELLTKQGWSSAYTVEAVIMQIAATPGEGQGSDPV 527
G+IC+++L +Q WS A TV V++ I + + DP+
Sbjct: 82 GSICLDILKEQ-WSPALTVSKVLLSICSLLTDPNPDDPL 119
>04_04_1516 -
34122205-34122348,34122430-34122534,34122878-34123005,
34124003-34124072
Length = 148
Score = 31.1 bits (67), Expect = 1.0
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = -3
Query: 643 GAICMELLTKQGWSSAYTVEAVIMQIAATPGEGQGSDPV 527
G+IC+++L +Q WS A T+ V++ I + + DP+
Sbjct: 82 GSICLDILKEQ-WSPALTISKVLLSICSLLTDPNPDDPL 119
>02_02_0339 +
9115297-9115366,9116280-9116407,9117537-9117641,
9118165-9118259,9119472-9119538,9119685-9119720
Length = 166
Score = 31.1 bits (67), Expect = 1.0
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = -3
Query: 643 GAICMELLTKQGWSSAYTVEAVIMQIAATPGEGQGSDPV 527
G+IC+++L +Q WS A T+ V++ I + + DP+
Sbjct: 82 GSICLDILKEQ-WSPALTISKVLLSICSLLTDPNPDDPL 119
>01_06_1150 +
34910941-34911010,34911611-34911738,34912025-34912129,
34912525-34912668
Length = 148
Score = 31.1 bits (67), Expect = 1.0
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = -3
Query: 643 GAICMELLTKQGWSSAYTVEAVIMQIAATPGEGQGSDPV 527
G+IC+++L +Q WS A T+ V++ I + + DP+
Sbjct: 82 GSICLDILKEQ-WSPALTISKVLLSICSLLTDPNPDDPL 119
>02_01_0154 +
1078561-1078630,1078758-1078885,1079016-1079120,
1079228-1079371
Length = 148
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = -3
Query: 643 GAICMELLTKQGWSSAYTVEAVIMQIAATPGEGQGSDPV--QCHQSCFTDSVQ 491
G IC+++L Q WS A T+ V++ I + + DP+ + C TD ++
Sbjct: 82 GNICLDILKDQ-WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDRLR 133
>01_06_0129 -
26770543-26770720,26774592-26774719,26774829-26774933,
26775661-26775788,26777332-26777433,26778760-26778861,
26779777-26779852,26779971-26780059,26780177-26780230,
26780482-26780614,26780671-26780797,26781590-26781648
Length = 426
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = -3
Query: 643 GAICMELLTKQGWSSAYTVEAVIMQIAATPGEGQGSDPV 527
G+IC+++L Q WS A T+ V++ I + + DP+
Sbjct: 306 GSICLDILKDQ-WSPALTISKVLLSICSLLTDPNPDDPL 343
>01_06_1488 +
37716986-37717076,37717424-37717558,37717755-37717831,
37717934-37718181,37718503-37718559,37718665-37718800,
37718944-37719001,37719110-37719195,37719270-37719326,
37719537-37719557,37720553-37720954,37721500-37721647,
37721940-37722036,37724065-37724202,37724496-37724598,
37724792-37724828,37724905-37725014,37725141-37725164
Length = 674
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 254 WTFCEYCTCIIVSGNVLNQVRGVNERLYKTY 162
W F C +++S +LN+V G+ E KTY
Sbjct: 156 WMFFWSCYVLLLSSMILNKVDGLQEMFEKTY 186
>08_02_1093 - 24271826-24273427
Length = 533
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/64 (25%), Positives = 26/64 (40%)
Frame = -3
Query: 598 AYTVEAVIMQIAATPGEGQGSDPVQCHQSCFTDSVQSGPCTAELQMSCSDT*EKWLVHTS 419
A+ V+ + A PGE + H + + C A + +T WL+ T+
Sbjct: 321 AFDVDDETIASIALPGERVAGGKPRSHLKSYLMEMSGRVCVATVDDGDRETNAVWLLITT 380
Query: 418 ERGW 407
ER W
Sbjct: 381 ERRW 384
>10_08_0755 -
20329127-20329189,20329276-20329389,20329465-20329617,
20331790-20332035
Length = 191
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -3
Query: 655 VLVGGAICMELLTKQ-GWSSAYTVEAVIMQIAATPGEGQGSDPVQ 524
V G +C+ +L + GW A TV+ +++ I + +DP Q
Sbjct: 118 VYPSGTVCLSILNEDSGWRPAITVKQILVGIQDLLDQPNPADPAQ 162
>03_01_0159 +
1298002-1298070,1298181-1298264,1300354-1300506,
1300589-1300702,1300814-1300876
Length = 160
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -3
Query: 655 VLVGGAICMELLTKQ-GWSSAYTVEAVIMQIAATPGEGQGSDPVQ 524
V G +C+ +L + GW A TV+ +++ I + +DP Q
Sbjct: 87 VYPSGTVCLSILNEDSGWRPAITVKQILVGIQDLLDQPNPADPAQ 131
>06_01_0878 +
6735266-6735340,6735946-6736041,6738610-6738720,
6738816-6739309,6739422-6739587,6739666-6739789,
6739874-6739986,6740085-6740693,6743095-6743385,
6743845-6743913,6744099-6744188,6744281-6744696,
6744882-6744969
Length = 913
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = -2
Query: 314 FHNVCLSVCATRFYVCAEYEWTFCEYCTCIIVSGNVLNQVRGVNERLYKTYRK 156
FH CL+ + E C C C I +VLN+++GV ++ ++ K
Sbjct: 342 FHQYCLNPPLLAEDIPQGDEGWLCPACDCKIDCIDVLNELQGVKLSIHDSWEK 394
>04_04_1142 +
31194801-31194952,31195548-31196037,31196463-31196546,
31196611-31196682,31196967-31197026,31197299-31197310
Length = 289
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -3
Query: 568 IAATPGEGQGSDPVQCHQSCFTDSVQSGPCTAELQMSCS 452
+AA PG+ QG P C ++++ G T + SCS
Sbjct: 196 LAACPGQAQGLVPPDCFFEFSSEALCEGSTTGIIISSCS 234
>03_02_0493 -
8866685-8866888,8866989-8867059,8867143-8867416,
8867666-8868036,8868127-8868482,8868558-8868630,
8869307-8869412,8869667-8869760,8870616-8870680,
8871655-8871927
Length = 628
Score = 27.9 bits (59), Expect = 9.4
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = -2
Query: 623 INEARLVIRVHCGSGDHADSRHPW*RARLGSSSV-PPKLFHRLSTVWPVHSRASN 462
+++ + + S DSR ++L SSS+ PPKL +S P+H A N
Sbjct: 333 VDQEYVFVHPEGSSSSMNDSRQRTMPSKLDSSSLSPPKLLTAVSAPRPIHGMAIN 387
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,959,862
Number of Sequences: 37544
Number of extensions: 452960
Number of successful extensions: 951
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -