Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_O12
         (477 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1 |...    26   2.6  
SPAC25H1.05 |meu29||sequence orphan|Schizosaccharomyces pombe|ch...    25   4.5  
SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc...    25   5.9  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    25   7.9  
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces...    25   7.9  

>SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 430 TGMKCLVLFPYLTIKENFLLLLKYISIH 347
           T  +C+V F  L   E+  LLL Y SIH
Sbjct: 19  TDFECIVKFTNLRSSEDVNLLLCYASIH 46


>SPAC25H1.05 |meu29||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
 Frame = +2

Query: 17  NFL*LCSRNKAQAQPYLINWS---PIQIC*SYLLTY**VECLQF*ILSMYIDTQYTIVHY 187
           N L +C  N+    P+L+ W+   P Q     ++ Y  +EC +   LSM   T+  I++Y
Sbjct: 59  NDLAICQHNQLNVAPHLLKWTCVWPNQSSHVEVIDY-NIECKKTVALSMDSITKTCILNY 117


>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +3

Query: 81  LFKFVDHIY*HIDKWNVYNFKF*VCT*ILNIQLFIIVLSM 200
           LF+F+ +     D WN +  K  + T +L+I  FI +L++
Sbjct: 85  LFRFIKYPSTIKDSWNHHLEKLFIATCLLSISTFIDMLAI 124


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 12/25 (48%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
 Frame = -3

Query: 409 LFPYLTIKENF-LLLLKYISIHNFL 338
           LF ++++   F LLLL+ ISI++FL
Sbjct: 115 LFSWISVANAFGLLLLRLISIYDFL 139


>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 796

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 13/60 (21%), Positives = 28/60 (46%)
 Frame = +1

Query: 64  FDKLVPYSNLLIIFTNILISGMFTILNFKYVHRYSIYNCSLLCCQWKTSLVIKCIQIYTS 243
           F+K   Y +L++++T    +    +     + + +  N +   C W T+   +C+ I TS
Sbjct: 690 FEKGKDYGSLVLLYT--ATNNHEGLKELSQLTKSTKINNTAFICSWLTNQPAECVNILTS 747


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,816,159
Number of Sequences: 5004
Number of extensions: 35419
Number of successful extensions: 84
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)