Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_O12
         (477 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0965 - 29762388-29762564,29764272-29766361,29766567-297671...    28   4.5  
07_03_1562 - 27738369-27738568,27738767-27738962,27739079-277392...    27   7.8  

>04_04_0965 - 29762388-29762564,29764272-29766361,29766567-29767170,
            29768395-29768637,29768704-29770203
          Length = 1537

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +1

Query: 166  SIYNCSLLCCQWKTSLVIKCIQIYTSHINLKMTLKVLII 282
            SI  C L+C QW+T  +I+  +  TSH+   M  K +++
Sbjct: 996  SIAMCMLVCRQWRT--LIESERFLTSHMLANMERKKVMV 1032


>07_03_1562 -
           27738369-27738568,27738767-27738962,27739079-27739230,
           27739775-27739832,27739923-27740038,27740117-27740237,
           27740348-27740635,27740817-27740987,27741091-27741741,
           27742515-27742676,27742764-27743904,27743992-27744152,
           27744239-27744564,27745678-27745825
          Length = 1296

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 270 SFNHLIYIDTSVLK*QYRKSSEIK 341
           + NHL+YI+TSV K Q +K    K
Sbjct: 823 ALNHLVYIETSVKKIQKQKRKNDK 846


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,692,139
Number of Sequences: 37544
Number of extensions: 159987
Number of successful extensions: 265
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 265
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)