Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_pT_O04
(762 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces p... 169 3e-43
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 32 0.10
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M... 27 2.2
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo... 27 3.9
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p... 27 3.9
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 25 8.9
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 8.9
SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces po... 25 8.9
>SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 612
Score = 169 bits (412), Expect = 3e-43
Identities = 90/252 (35%), Positives = 144/252 (57%), Gaps = 8/252 (3%)
Frame = -2
Query: 761 DNPXTRLVPDLHDVHPDDAFSTVPYEKGSLFXRYLEDLIGGPEVFDDFLRSYLKNFSRKS 582
D+ T+L+ +L PDDAFSTVPYEKGS F +E +IGGP VF+ FL Y + F++ +
Sbjct: 358 DSEYTKLIQNLEGRDPDDAFSTVPYEKGSNFLYEIERVIGGPSVFEPFLPFYFRKFAKST 417
Query: 581 LDTDEFKAYLFNYFQD---NEKLKSVDWETWLYKSGMPPVIPDYDTSMTKPITALV---- 423
++ +FK L+ YF KL S+DW+TW + GMPPV P +DT++ P L
Sbjct: 418 VNEVKFKHALYEYFSPLGLASKLDSIDWDTWYHAPGMPPVKPHFDTTLADPCYKLAESWT 477
Query: 422 -AKINQRNATLISYEDVQTFTPHQIMIFLQELIKHPPLPLDILHTLGAEYKIDSSKNTEI 246
+ N + + S +D++ ++ Q +FL + + P + + +G Y SKN E+
Sbjct: 478 NSAKNSDDPSKFSSKDIENWSAGQKSLFLDVVYEAVSFPHNYIKRMGDVYSFAESKNAEL 537
Query: 245 LYRWLRLCLRSKDQSILGEVFDFVNHIGRMRYVRPLYRDLYDWEDVRNQAIENFLKNEQD 66
+R+ +L L+SK + + + + V +GRM++VRP++R L + + R AIE F K +
Sbjct: 538 SFRFFKLALKSKYKPLYNTIAERVGSVGRMKFVRPIFRLLNEAD--RAFAIETFEKYKHF 595
Query: 65 MMHVCAHTVKKD 30
+CA V+KD
Sbjct: 596 YHKICASQVEKD 607
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 882
Score = 31.9 bits (69), Expect = 0.10
Identities = 21/88 (23%), Positives = 37/88 (42%)
Frame = -2
Query: 740 VPDLHDVHPDDAFSTVPYEKGSLFXRYLEDLIGGPEVFDDFLRSYLKNFSRKSLDTDEFK 561
VP +HD + F + Y KGS R + + G + F ++ Y+ + T++
Sbjct: 385 VPIMHDYEINQIFDAISYSKGSCVIRMVSKYV-GEDTFIKGIQKYISKHRYGNTVTEDLW 443
Query: 560 AYLFNYFQDNEKLKSVDWETWLYKSGMP 477
A L + + + S W K+G P
Sbjct: 444 AAL--SAESGQDISST-MHNWTKKTGYP 468
>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1115
Score = 27.5 bits (58), Expect = 2.2
Identities = 14/61 (22%), Positives = 25/61 (40%)
Frame = -2
Query: 737 PDLHDVHPDDAFSTVPYEKGSLFXRYLEDLIGGPEVFDDFLRSYLKNFSRKSLDTDEFKA 558
P H D S E + + +ED I GP+ F + + +S+ ++ +F
Sbjct: 434 PKFHSERQKDIMSGNDIEGSASYFEEIEDTISGPDSIPKFYQRPVIKYSKFGIEDFDFGF 493
Query: 557 Y 555
Y
Sbjct: 494 Y 494
>SPAC6G10.07 |||nuclear cap-binding complex large subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 780
Score = 26.6 bits (56), Expect = 3.9
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Frame = -2
Query: 632 VFDDFLRSYLKNFSRKSLDTD-EFKAYLFNYFQDNEKLKSVDWETWLYK 489
VF+ L + LK+FSRKSLD++ E LF+++ KL+ + WL K
Sbjct: 581 VFEKHLNT-LKHFSRKSLDSEIEVVDELFSFW----KLQPFNAVMWLDK 624
>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 723
Score = 26.6 bits (56), Expect = 3.9
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -2
Query: 143 PLYRDLYDWEDVRNQAIENFLKNEQDMMHVCAHTV 39
P+ +L +W + ++IENF K + C H V
Sbjct: 69 PVEGELVEWAVKKEESIENFSKIVAKLHEPCTHEV 103
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 25.4 bits (53), Expect = 8.9
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = -1
Query: 468 TRLRYFNDETDNS---SRCEDQPAQRDADIL*RRANVYSSSNNDISARIDKTSSTAARYS 298
TR Y +++T +R + RD + L + NV + N D ++ TSS +A S
Sbjct: 623 TRDSYISEDTKILRLLNRSSSKLQDRDQEYLISKNNVNGNGNRDWVQPVNTTSSVSAFAS 682
Query: 297 P 295
P
Sbjct: 683 P 683
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 8.9
Identities = 23/86 (26%), Positives = 39/86 (45%)
Frame = +1
Query: 505 SQSTLFNFSLSWK*LNR*ALNSSVSSDFRLKFFRYDRRKSSNTSGPPIKSSRYRXNSEPF 684
S STL + SLS + + +SS +S SS++S I SS +S
Sbjct: 226 SSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTS 285
Query: 685 SXGTVENASSGCTSWRSGTNRVXGLS 762
+ T+ ++SS +S S ++ + S
Sbjct: 286 TSSTISSSSSSSSSPTSTSSTISSSS 311
>SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 296
Score = 25.4 bits (53), Expect = 8.9
Identities = 9/39 (23%), Positives = 21/39 (53%)
Frame = -2
Query: 653 DLIGGPEVFDDFLRSYLKNFSRKSLDTDEFKAYLFNYFQ 537
DL+G ++F+ + + + K++D ++ Y F+ Q
Sbjct: 255 DLLGWQQIFELLCKESIFQSTTKTMDVSQYTDYTFSLLQ 293
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,157,582
Number of Sequences: 5004
Number of extensions: 67244
Number of successful extensions: 243
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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