Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_O04
         (762 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0470 + 34164873-34165856,34166335-34166568,34166680-341670...   107   7e-24
12_02_1104 + 26121288-26122200,26122324-26122506,26122841-26124009     33   0.25 
02_02_0398 - 9777596-9778146,9778229-9778400,9778522-9778639,977...    29   5.3  
02_01_0459 + 3298780-3298788,3298900-3299037,3299174-3299207,329...    29   5.3  
08_02_0085 + 12108474-12108552,12108656-12108759,12109726-121099...    28   7.1  

>03_06_0470 + 34164873-34165856,34166335-34166568,34166680-34167006,
            34168426-34168716
          Length = 611

 Score =  107 bits (258), Expect = 7e-24
 Identities = 66/237 (27%), Positives = 116/237 (48%)
 Frame = -2

Query: 749  TRLVPDLHDVHPDDAFSTVPYEKGSLFXRYLEDLIGGPEVFDDFLRSYLKNFSRKSLDTD 570
            T+L P +  + PDD +S VPYEKG  F   +E  IG P  FD+FL++Y+  F  KS+DT+
Sbjct: 373  TKLKPKMAGIDPDDVYSEVPYEKGFQFLWRIERQIGRP-AFDEFLKNYISTFKFKSIDTE 431

Query: 569  EFKAYLFNYFQDNEKLKSVDWETWLYKSGMPPVIPDYDTSMTKPITALVAKINQRNATLI 390
             F  +L       E    +D + W+  +G+PP   + ++++ K I +L A+   ++  L 
Sbjct: 432  TFLEFLKTNVPGIE--NQIDLQLWIEGTGIPPDAMEPESAIYKKICSLAAEF--KSGKLP 487

Query: 389  SYEDVQTFTPHQIMIFLQELIKHPPLPLDILHTLGAEYKIDSSKNTEILYRWLRLCLRSK 210
            S ++V  ++  +  ++L+ L     +    +  L   YK+  S + E+   +L+L + + 
Sbjct: 488  SEDEVADWSGQEWELYLENL--PTDVEASQVTALDERYKLSESCDYEVKVAFLQLAIPTG 545

Query: 209  DQSILGEVFDFVNHIGRMRYVRPLYRDLYDWEDVRNQAIENFLKNEQDMMHVCAHTV 39
             +    EV   +  +GRM+Y+RPLY  L                   +  H  A +V
Sbjct: 546  CRCYFNEVEKCLKQVGRMKYLRPLYSSLARCSGEEKMLAHRIFSEAHEFYHPIARSV 602


>12_02_1104 + 26121288-26122200,26122324-26122506,26122841-26124009
          Length = 754

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
 Frame = -2

Query: 392 ISYEDVQTFTPHQIMIFLQELIKHPPLPLDILHTLGAEYKIDSSKNTEILYRWLRLCLRS 213
           + Y D ++FT HQ+     ++     + L++L    A Y  D +KN  + YR+L +  ++
Sbjct: 598 MGYLDPESFTSHQLTE-RSDVYSFGVVLLELLTRKKALYTNDFNKNESLSYRFLSMFRQN 656

Query: 212 KDQSILG-EVFDFVN 171
           K Q++L  E+ D  N
Sbjct: 657 KHQAMLDPEIVDGSN 671


>02_02_0398 -
           9777596-9778146,9778229-9778400,9778522-9778639,
           9778751-9779014,9779287-9779354,9779520-9780145,
           9780257-9780412,9780528-9780625,9780741-9780832,
           9780940-9781011
          Length = 738

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +2

Query: 155 ASVLCGSQNRTLRPRSIDLCF*GTAATIYTKSRYSCYYQFYTLRQECG--EYLAAVEDVL 328
           AS + G Q R +  R       GTA     ++R + Y   + LR +CG    LAA++D +
Sbjct: 213 ASTIVGGQVRNVSHRQGGALAAGTARGGAPRARVAVYKVCWGLRAQCGGAAILAAIDDAM 272

Query: 329 S 331
           +
Sbjct: 273 N 273


>02_01_0459 +
           3298780-3298788,3298900-3299037,3299174-3299207,
           3299528-3299531,3299814-3299949,3300034-3300090,
           3301689-3301786,3301876-3301947,3302056-3302228,
           3302552-3302698,3303113-3303336,3305300-3305306,
           3305634-3305800,3306033-3306068,3306787-3307004,
           3307115-3307172,3307761-3307842,3308045-3308207,
           3308594-3308598,3308700-3308885,3308969-3309548,
           3309642-3309774,3309880-3309948,3310184-3310395,
           3310654-3310891,3311228-3311386,3311501-3311926,
           3312010-3312447,3312593-3312712,3312784-3313266,
           3313471-3314009,3314178-3314667,3314836-3314904,
           3315735-3315839,3315940-3316158,3316254-3316508,
           3316602-3316651,3317175-3317284,3317372-3317454,
           3317560-3317772,3317870-3318040
          Length = 2391

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = -1

Query: 489 ERYAPRHTRLRYFNDETDNS-SRCEDQPAQRDADIL*RRANVYSSS-NNDISARIDKTSS 316
           +++   H R     +E   S +R E       +DIL R AN   SS N D++ R   T++
Sbjct: 165 KKFIKAHARFLKAQEEVKRSQARFERLGDLLASDILKRGANEEGSSVNEDLNERSPNTAA 224

Query: 315 TAARYSPHS 289
           T  R  P+S
Sbjct: 225 TKKRSIPYS 233


>08_02_0085 +
           12108474-12108552,12108656-12108759,12109726-12109925,
           12110003-12110103,12110184-12110379,12110584-12110745,
           12110856-12110937,12111741-12112004,12113047-12113174,
           12113795-12113957
          Length = 492

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = -2

Query: 629 FDDFLRSYLKNFSRKSLDTDEFKAYLFNYFQDNEKLKSVDWETWLYKSGMPPVI 468
           FDD     L+   RK  D ++   Y F++       KS+DW+ + YK  +P V+
Sbjct: 440 FDDINTEKLRITMRKQEDKND-GGYCFDFDP-----KSIDWDEYFYKVHIPGVV 487


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,350,800
Number of Sequences: 37544
Number of extensions: 417757
Number of successful extensions: 1267
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1264
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)