Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_O01
         (736 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125955-4|AAO12428.1|  181|Caenorhabditis elegans Hypothetical ...   153   9e-38
AF125955-3|AAD14720.1|  336|Caenorhabditis elegans Hypothetical ...   153   9e-38
AF125955-5|AAO12427.1|  273|Caenorhabditis elegans Hypothetical ...    77   2e-14
U70850-1|AAB09124.2|  104|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AC006648-8|AAF39857.1|  302|Caenorhabditis elegans Btb and math ...    29   3.4  
U23179-6|AAK68205.1|  341|Caenorhabditis elegans Serpentine rece...    28   6.0  
AF106573-10|AAC78155.2|  862|Caenorhabditis elegans Gex interact...    28   7.9  

>AF125955-4|AAO12428.1|  181|Caenorhabditis elegans Hypothetical
           protein F46E10.10c protein.
          Length = 181

 Score =  153 bits (372), Expect = 9e-38
 Identities = 70/154 (45%), Positives = 95/154 (61%), Gaps = 1/154 (0%)
 Frame = -2

Query: 735 KRVIXWGNHSSTQFPDASNAVAIVGGAQKSVSEIINDDAYLKGAFVTTVQKRGAAVIXXX 556
           K VI WGNHS TQFPD ++A     G +      + D+A+L+G F+ TVQKRG  +I   
Sbjct: 25  KNVIIWGNHSGTQFPDVTHATVNKNGTETDAYAAVGDNAFLQGPFIATVQKRGGVIIEKR 84

Query: 555 XXXXXXXXXXXXSDHMRDWFLGTE-DRWVSMGVVSDGSYGTPRDVVYSFPVTVTNGKWKI 379
                        DH+ DW  GT+  ++VSM V SDGSYG P+ +++SFPVT+  G+WKI
Sbjct: 85  KLSSAMSAAKAACDHIHDWHFGTKAGQFVSMAVPSDGSYGIPQGLIFSFPVTIEGGEWKI 144

Query: 378 VEGLTISDFARQMLDATGKELVEEKQEALDVCKD 277
           V+GL+  DFA+  + AT KEL EE+ +AL  C D
Sbjct: 145 VQGLSFDDFAKGKIAATTKELEEERDDALKACDD 178


>AF125955-3|AAD14720.1|  336|Caenorhabditis elegans Hypothetical
           protein F46E10.10a protein.
          Length = 336

 Score =  153 bits (372), Expect = 9e-38
 Identities = 70/154 (45%), Positives = 95/154 (61%), Gaps = 1/154 (0%)
 Frame = -2

Query: 735 KRVIXWGNHSSTQFPDASNAVAIVGGAQKSVSEIINDDAYLKGAFVTTVQKRGAAVIXXX 556
           K VI WGNHS TQFPD ++A     G +      + D+A+L+G F+ TVQKRG  +I   
Sbjct: 180 KNVIIWGNHSGTQFPDVTHATVNKNGTETDAYAAVGDNAFLQGPFIATVQKRGGVIIEKR 239

Query: 555 XXXXXXXXXXXXSDHMRDWFLGTE-DRWVSMGVVSDGSYGTPRDVVYSFPVTVTNGKWKI 379
                        DH+ DW  GT+  ++VSM V SDGSYG P+ +++SFPVT+  G+WKI
Sbjct: 240 KLSSAMSAAKAACDHIHDWHFGTKAGQFVSMAVPSDGSYGIPQGLIFSFPVTIEGGEWKI 299

Query: 378 VEGLTISDFARQMLDATGKELVEEKQEALDVCKD 277
           V+GL+  DFA+  + AT KEL EE+ +AL  C D
Sbjct: 300 VQGLSFDDFAKGKIAATTKELEEERDDALKACDD 333


>AF125955-5|AAO12427.1|  273|Caenorhabditis elegans Hypothetical
           protein F46E10.10b protein.
          Length = 273

 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 33/84 (39%), Positives = 44/84 (52%)
 Frame = -2

Query: 735 KRVIXWGNHSSTQFPDASNAVAIVGGAQKSVSEIINDDAYLKGAFVTTVQKRGAAVIXXX 556
           K VI WGNHS TQFPD ++A     G +      + D+A+L+G F+ TVQKRG  +I   
Sbjct: 180 KNVIIWGNHSGTQFPDVTHATVNKNGTETDAYAAVGDNAFLQGPFIATVQKRGGVIIEKR 239

Query: 555 XXXXXXXXXXXXSDHMRDWFLGTE 484
                        DH+ DW  GT+
Sbjct: 240 KLSSAMSAAKAACDHIHDWHFGTK 263


>U70850-1|AAB09124.2|  104|Caenorhabditis elegans Hypothetical
           protein F28F9.3 protein.
          Length = 104

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/58 (31%), Positives = 36/58 (62%)
 Frame = -3

Query: 497 SLALKTDGLAWELFQMDLMVLRVMLYIHSLLLLPMESGKLLRVSLSLILPVKCSMLLA 324
           S+  K  G+ W+ +++  + +  +L +HSLL+LP+  G L ++S++L + +  S  LA
Sbjct: 11  SITRKYFGIRWD-YRISSINMASLLDLHSLLVLPL--GDLPKISIALPISLALSNSLA 65


>AC006648-8|AAF39857.1|  302|Caenorhabditis elegans Btb and math
           domain containingprotein 1 protein.
          Length = 302

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 580 WCCRYCRQENVICSFCC*SCIRPHERLVPW 491
           W   +CR+E  +  F    C+RP + +VPW
Sbjct: 36  WQLSFCRKEEFVGVFL--RCLRPTDGIVPW 63


>U23179-6|AAK68205.1|  341|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 1 protein.
          Length = 341

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/50 (24%), Positives = 26/50 (52%)
 Frame = -3

Query: 158 PNHGRLKSIIVKAFINVFIFVLEL*MFLKHSDSVVKYFMSFCSLSLSYHI 9
           P HG +K +++  F++ F+F + L +   +   V  +  S C L +  ++
Sbjct: 49  PFHGNIKFMLISYFLSAFLFAVVLALTFGYHILVPLFITSKCDLIIQPYL 98


>AF106573-10|AAC78155.2|  862|Caenorhabditis elegans Gex interacting
           protein protein 12 protein.
          Length = 862

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +1

Query: 550 HFPGGNNGSTTFLNRCYKCAFQICIIIDNFRNRFLSASNNSYSI 681
           H P  ++G  + LNR    +   C I ++F + F+ A+N +  +
Sbjct: 398 HLPSSSHGECSNLNRTLPASDLNCSIGEDFDSSFVDANNQTLPV 441


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,222,833
Number of Sequences: 27780
Number of extensions: 347259
Number of successful extensions: 941
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 936
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)