Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_N24
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39647-6|AAM51529.1|  505|Caenorhabditis elegans Twik family of ...    30   1.8  
AF083649-1|AAC32860.1|  381|Caenorhabditis elegans putative pota...    30   1.8  
U88184-5|AAK95876.1|  523|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>U39647-6|AAM51529.1|  505|Caenorhabditis elegans Twik family of
           potassium channelsprotein 17, isoform a protein.
          Length = 505

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +1

Query: 163 FSAQQKPGLKLRRSTFHLVSVICQGGLPRDISQEICMIYWHQY 291
           F   QKP L+L  S    VS + +  LP+ + + I  + W +Y
Sbjct: 10  FQVVQKPQLRLPFSDLAFVSSLPEHYLPQSLKENIGRVKWEEY 52


>AF083649-1|AAC32860.1|  381|Caenorhabditis elegans putative
           potassium channel subunitn2P17m3 protein.
          Length = 381

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +1

Query: 163 FSAQQKPGLKLRRSTFHLVSVICQGGLPRDISQEICMIYWHQY 291
           F   QKP L+L  S    VS + +  LP+ + + I  + W +Y
Sbjct: 10  FQVVQKPQLRLPFSDLAFVSSLPEHYLPQSLKENIGRVKWEEY 52


>U88184-5|AAK95876.1|  523|Caenorhabditis elegans Hypothetical
           protein F36H5.11 protein.
          Length = 523

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 17/44 (38%), Positives = 26/44 (59%)
 Frame = -2

Query: 378 GTLPNISEVLTLGC*VHCPLESCAI*QIIILMPIYHTYFLRDIS 247
           GTLP + ++  LGC    PL+S  I +II+   I  TYF+  ++
Sbjct: 370 GTLPIVDQLTFLGC--TKPLKS-GIHEIIVQNHIRFTYFIERVA 410


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,679,946
Number of Sequences: 27780
Number of extensions: 287680
Number of successful extensions: 528
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)