Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_N23
         (442 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92849-14|CAE17857.1|  359|Caenorhabditis elegans Hypothetical p...    31   0.37 
Z78414-4|CAE17982.1|  359|Caenorhabditis elegans Hypothetical pr...    31   0.37 
Z81484-10|CAE11298.1|  328|Caenorhabditis elegans Hypothetical p...    30   0.86 
U80030-8|AAG24166.2|  375|Caenorhabditis elegans Serpentine rece...    29   2.0  
AL110487-7|CAB54431.1|  581|Caenorhabditis elegans Hypothetical ...    27   8.0  
AC006772-2|AAF60609.2|  341|Caenorhabditis elegans Hypothetical ...    27   8.0  

>Z92849-14|CAE17857.1|  359|Caenorhabditis elegans Hypothetical
           protein H12D21.11 protein.
          Length = 359

 Score = 31.1 bits (67), Expect = 0.37
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 270 KCFFFISDTFQTPIIHTCEFFLISNLLYTTLASNFL 377
           K F +IS  F+  + H    F ISNLLY  L S+ +
Sbjct: 173 KTFIYISIVFKIMLDHFIRIFYISNLLYNFLISSVI 208


>Z78414-4|CAE17982.1|  359|Caenorhabditis elegans Hypothetical
           protein H12D21.11 protein.
          Length = 359

 Score = 31.1 bits (67), Expect = 0.37
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 270 KCFFFISDTFQTPIIHTCEFFLISNLLYTTLASNFL 377
           K F +IS  F+  + H    F ISNLLY  L S+ +
Sbjct: 173 KTFIYISIVFKIMLDHFIRIFYISNLLYNFLISSVI 208


>Z81484-10|CAE11298.1|  328|Caenorhabditis elegans Hypothetical
           protein C47A10.11 protein.
          Length = 328

 Score = 29.9 bits (64), Expect = 0.86
 Identities = 24/83 (28%), Positives = 39/83 (46%)
 Frame = +2

Query: 161 VQIA*TIDYIIKKSTLTGIPHFVNFFILF*TELLQHKVFFFYIRYLSNAYNSHM*VFSNI 340
           V I  T++Y++  ST++   +   FF+LF          + YIRYL   +N  + +FS +
Sbjct: 95  VYIGITVNYLVPVSTVSMFEN--RFFVLF-----AEDTHWRYIRYLLLIFNYTIAIFSGM 147

Query: 341 *FTLYDPRLKLLKPIKLATNEHI 409
              L  P  +  + I  A N  I
Sbjct: 148 VTCLEIPDQQYARAIVFAKNSEI 170


>U80030-8|AAG24166.2|  375|Caenorhabditis elegans Serpentine
           receptor, class w protein112 protein.
          Length = 375

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = +2

Query: 191 IKKSTLTGIPHFVNFFILF*TELLQHKVFFFYIRYLSNAYN 313
           ++KST   +  F+N F+ F   + +HK + +Y+  L N ++
Sbjct: 14  LEKSTARALCSFLNDFVNFVDVVNKHKFYIYYLVVLINLFH 54


>AL110487-7|CAB54431.1|  581|Caenorhabditis elegans Hypothetical
           protein Y39E4B.10 protein.
          Length = 581

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 7/56 (12%)
 Frame = +3

Query: 228 LIFLFYFKPSYCNIK-----CFFFISDTFQTP--IIHTCEFFLISNLLYTTLASNF 374
           LIFL  FK +Y +I+      FF+IS    T         FFLI N L  ++ SNF
Sbjct: 305 LIFLNIFKKNYYHIRKIRFFNFFYISKKILTKKFFKKNLFFFLIFNNLEKSIFSNF 360


>AC006772-2|AAF60609.2|  341|Caenorhabditis elegans Hypothetical
           protein Y46D2A.1 protein.
          Length = 341

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +3

Query: 234 FLFYFKPSYCNIKCFFFISDTFQTPIIHTCEFFLISNLLYTTLASN 371
           F  + +P    +K ++F   T   P+  T E   +SNL+YT  + N
Sbjct: 154 FFDHIEPLQIGVKYWYF---TASKPVSMTMESKYVSNLMYTATSVN 196


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,340,202
Number of Sequences: 27780
Number of extensions: 155164
Number of successful extensions: 285
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 285
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)