Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_pT_N22
(666 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29A4.03c |||mitochondrial ribosomal protein subunit S9|Schiz... 76 4e-15
SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Sc... 40 2e-04
SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosa... 40 2e-04
SPBP35G2.02 |||DUF1000 family protein|Schizosaccharomyces pombe|... 30 0.34
SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces... 27 1.8
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc... 27 3.2
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo... 26 4.2
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula... 25 7.4
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 25 9.8
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c... 25 9.8
>SPAC29A4.03c |||mitochondrial ribosomal protein subunit
S9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 132
Score = 76.2 bits (179), Expect = 4e-15
Identities = 45/121 (37%), Positives = 63/121 (52%), Gaps = 1/121 (0%)
Frame = -1
Query: 402 RKKARGDVTIRSPGTGKITINKKDI-TYFDDVQSREQVLFPLIFTGMQNRVDVECNVEGG 226
RK ++ V + PGTGK +N YF + R+ ++PL +V V GG
Sbjct: 14 RKSSKATVKML-PGTGKFYVNGSPFDVYFQRMVHRKHAVYPLAACNRLTNYNVWATVHGG 72
Query: 225 GPSGQSGAIRWGIAWGLRSFVDKDMLQQMQVAGLLTRDHRRRERKKPGQPGARKKPTWKK 46
GP+GQSGA+ I+ L + + Q ++ + D R+ ERKK GQP ARKK TW K
Sbjct: 73 GPTGQSGAVHAAISKSL-ILQEPSLKQVIKDTHCVLNDKRKVERKKTGQPKARKKYTWVK 131
Query: 45 R 43
R
Sbjct: 132 R 132
>SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein
S16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 140
Score = 40.3 bits (90), Expect = 2e-04
Identities = 38/130 (29%), Positives = 54/130 (41%), Gaps = 13/130 (10%)
Frame = -1
Query: 411 ECLRKKARGDVTIRSP-GTGKITINKKDITYFDDVQSREQVLFPLIFTGMQN--RVDVEC 241
+C KK G G I +N ++ R +V P++ G VD+
Sbjct: 5 QCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGVDIRV 64
Query: 240 NVEGGGPSGQSGAIRWGIAWGL----RSFVDKDMLQQMQVA------GLLTRDHRRRERK 91
V GGG Q AIR I+ + + FVD+ +++ A LL D RR E K
Sbjct: 65 RVSGGGHVSQIYAIRQAISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRRMEPK 124
Query: 90 KPGQPGARKK 61
K G GAR +
Sbjct: 125 KFGGHGARAR 134
>SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein
S16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 140
Score = 40.3 bits (90), Expect = 2e-04
Identities = 38/130 (29%), Positives = 54/130 (41%), Gaps = 13/130 (10%)
Frame = -1
Query: 411 ECLRKKARGDVTIRSP-GTGKITINKKDITYFDDVQSREQVLFPLIFTGMQN--RVDVEC 241
+C KK G G I +N ++ R +V P++ G VD+
Sbjct: 5 QCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGVDIRV 64
Query: 240 NVEGGGPSGQSGAIRWGIAWGL----RSFVDKDMLQQMQVA------GLLTRDHRRRERK 91
V GGG Q AIR I+ + + FVD+ +++ A LL D RR E K
Sbjct: 65 RVSGGGHVSQIYAIRQAISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRRMEPK 124
Query: 90 KPGQPGARKK 61
K G GAR +
Sbjct: 125 KFGGHGARAR 134
>SPBP35G2.02 |||DUF1000 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 207
Score = 29.9 bits (64), Expect = 0.34
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Frame = -1
Query: 420 TTYECLRKKARGDVTIRSPGTGKITINKKDITYFD----DVQSREQVLFPLIFTG 268
T Y C+RK++ + P +GK+ D+ Y D + + +Q+LF + F G
Sbjct: 23 TLYSCIRKESIVTLNEAVPDSGKLVFKPWDLRYDDTDIVESDADDQLLFQVPFAG 77
>SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 27.5 bits (58), Expect = 1.8
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = -1
Query: 531 SYRYKDFIEKFRKPLAVQKFALEIPKPNYDEEGRAYITTYECLRKKARGDVT 376
SY F E P AVQ + + P+ GRA E R+K + D T
Sbjct: 405 SYNQAHFNEAHPPPKAVQGYRFNVFYPDLIGTGRAPTYRIERTRRKNKSDTT 456
>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 721
Score = 26.6 bits (56), Expect = 3.2
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Frame = -1
Query: 483 VQKFALEIPKPNYDEEGRAYIT--TYECLRKKARGDVTIRSPGTG--KITINKKDITYFD 316
VQKFA IP+ Y G Y+T C+ V ++ G G K+ N++ + D
Sbjct: 68 VQKFAQNIPENKYVRSG-DYVTIKPKHCMSHDNSWPVALKFMGIGAKKVFDNRQIVCTLD 126
Query: 315 -DVQSREQ 295
DVQ++ +
Sbjct: 127 HDVQNKSE 134
>SPBC18A7.02c |||seven transmembrane receptor-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 26.2 bits (55), Expect = 4.2
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 370 SYGYIPSSLFP*TLISCNIGSSLFVIIRFWNF 465
+YG +P+S FP IS I + VI+ W F
Sbjct: 162 AYGGLPASQFPRMPISGGITIAYSVILALWMF 193
>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
Prp45|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 25.4 bits (53), Expect = 7.4
Identities = 10/23 (43%), Positives = 10/23 (43%)
Frame = +2
Query: 179 PQAIPHLMAPDWPEGPPPSTLHS 247
P H P P PPP LHS
Sbjct: 214 PPKFRHKKVPRGPPSPPPPVLHS 236
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 25.0 bits (52), Expect = 9.8
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 111 HRRRERKKPGQPGARKKPTWKKR 43
H+ R +KP QP A K T K +
Sbjct: 147 HQTRATRKPAQPKAEKSTTSKSK 169
>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
3|||Manual
Length = 594
Score = 25.0 bits (52), Expect = 9.8
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +2
Query: 152 ISLSTKLRRPQAIPHLMAPDWPEGP-PPSTLHSTSTR 259
I +T P +P ++AP P P PP H +TR
Sbjct: 544 IPSNTTTIAPSPVPTIIAPALPSTPAPPLPSHPMATR 580
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,900,899
Number of Sequences: 5004
Number of extensions: 63319
Number of successful extensions: 176
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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