Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_pT_N22
(666 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1553 - 27653473-27653490,27653634-27653673,27653852-276539... 94 1e-19
03_06_0097 - 31632238-31632525,31633386-31633769 68 6e-12
12_01_0152 - 1168928-1169377 46 4e-05
11_01_0155 - 1287003-1287452 46 4e-05
03_02_0526 + 9173003-9173063,9173190-9173255,9173349-9173446,917... 30 1.9
11_06_0158 + 20756690-20756843,20756950-20757161,20757216-20757239 29 4.4
06_02_0092 - 11624905-11625123,11625206-11625292,11625767-116258... 29 4.4
04_03_0946 + 20975955-20976095,20976189-20976330,20976449-209765... 29 4.4
01_01_0631 - 4752606-4752706,4754039-4755578 29 4.4
07_03_1399 - 26274064-26274303,26274395-26274652,26274791-262749... 28 5.8
03_04_0201 - 18409088-18409306,18409389-18409475,18409950-184100... 28 5.8
>07_03_1553 -
27653473-27653490,27653634-27653673,27653852-27653939,
27654150-27654230,27654644-27655084,27655692-27656325
Length = 433
Score = 93.9 bits (223), Expect = 1e-19
Identities = 60/135 (44%), Positives = 77/135 (57%), Gaps = 1/135 (0%)
Frame = -1
Query: 444 DEEGRAYITTYECLRKKARGDVTIRSPGTGKITINKKDI-TYFDDVQSREQVLFPLIFTG 268
DE+GRAY T RK + V I+ PG GK +N K +YF + R +L P T
Sbjct: 286 DEKGRAYGTGK---RKCSIARVWIQ-PGDGKFIVNDKQFDSYFPILDHRADLLRPFTVTK 341
Query: 267 MQNRVDVECNVEGGGPSGQSGAIRWGIAWGLRSFVDKDMLQQMQVAGLLTRDHRRRERKK 88
R DV C V+GGG SGQ GAIR GI+ L+++ + + ++ AG LTRD R ERKK
Sbjct: 342 TLGRWDVTCTVKGGGVSGQVGAIRLGISRALQNW-EPGLRPNLKAAGYLTRDSRVVERKK 400
Query: 87 PGQPGARKKPTWKKR 43
PG+ ARK W KR
Sbjct: 401 PGKAKARKSFQWVKR 415
>03_06_0097 - 31632238-31632525,31633386-31633769
Length = 223
Score = 68.1 bits (159), Expect = 6e-12
Identities = 47/122 (38%), Positives = 64/122 (52%), Gaps = 2/122 (1%)
Frame = -1
Query: 402 RKKARGDVTIRSPGTGKITINKKDITYF--DDVQSREQVLFPLIFTGMQNRVDVECNVEG 229
RK A V ++ GTG++ IN +D + + E PL+ G +N DV V G
Sbjct: 104 RKTAIARVVLQE-GTGRVFINFRDAKEYLQGNPMWMEYCKVPLVTLGFENSYDVFVKVHG 162
Query: 228 GGPSGQSGAIRWGIAWGLRSFVDKDMLQQMQVAGLLTRDHRRRERKKPGQPGARKKPTWK 49
GG SGQ+ AI G+A L + + ++ GLLTRD R ERKK G ARK+P +
Sbjct: 163 GGLSGQAQAICLGVARALVKISTANKVT-LRGEGLLTRDTRIVERKKAGLKKARKRPQFS 221
Query: 48 KR 43
KR
Sbjct: 222 KR 223
>12_01_0152 - 1168928-1169377
Length = 149
Score = 45.6 bits (103), Expect = 4e-05
Identities = 42/132 (31%), Positives = 56/132 (42%), Gaps = 13/132 (9%)
Frame = -1
Query: 417 TYECL-RKKARGDVTIRSPGTGKITINKKDITYFDDVQSREQVLFPLIFTGMQN--RVDV 247
T +C RKK V+ PG G I +N I R + P++ G +D+
Sbjct: 12 TVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRFKDIDM 71
Query: 246 ECNVEGGGPSGQSGAIRWGIAWGLRSFVDK--DMLQQMQVAG--------LLTRDHRRRE 97
V GGG + Q AIR IA L ++ K D + +V LL D RR E
Sbjct: 72 RIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCE 131
Query: 96 RKKPGQPGARKK 61
KK G GAR +
Sbjct: 132 PKKFGGRGARAR 143
>11_01_0155 - 1287003-1287452
Length = 149
Score = 45.6 bits (103), Expect = 4e-05
Identities = 42/132 (31%), Positives = 56/132 (42%), Gaps = 13/132 (9%)
Frame = -1
Query: 417 TYECL-RKKARGDVTIRSPGTGKITINKKDITYFDDVQSREQVLFPLIFTGMQN--RVDV 247
T +C RKK V+ PG G I +N I R + P++ G +D+
Sbjct: 12 TVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRFKDIDM 71
Query: 246 ECNVEGGGPSGQSGAIRWGIAWGLRSFVDK--DMLQQMQVAG--------LLTRDHRRRE 97
V GGG + Q AIR IA L ++ K D + +V LL D RR E
Sbjct: 72 RIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCE 131
Query: 96 RKKPGQPGARKK 61
KK G GAR +
Sbjct: 132 PKKFGGRGARAR 143
>03_02_0526 +
9173003-9173063,9173190-9173255,9173349-9173446,
9173555-9173592,9173679-9173766,9173854-9174129,
9174232-9174456
Length = 283
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = -1
Query: 645 GSMWVNKDQLEQLLVEKISDLEYDNFKVVMERLVSLPYSYRYKDF 511
G V K +E+ +E + +L Y N+ M L ++ YS+ Y ++
Sbjct: 42 GDYMVEKLGIEESKIENLGNLLYKNYGTTMAGLRAIGYSFDYDEY 86
>11_06_0158 + 20756690-20756843,20756950-20757161,20757216-20757239
Length = 129
Score = 28.7 bits (61), Expect = 4.4
Identities = 22/86 (25%), Positives = 40/86 (46%)
Frame = -1
Query: 300 EQVLFPLIFTGMQNRVDVECNVEGGGPSGQSGAIRWGIAWGLRSFVDKDMLQQMQVAGLL 121
+++L PL+ G+ + + V + GG + G R G + +F D + + V L
Sbjct: 29 QRLLDPLLPGGLLDGLLV-MGLGGGADAAAHGERRGGAGFAADAFSSGDEIDEDAVVELG 87
Query: 120 TRDHRRRERKKPGQPGARKKPTWKKR 43
D R+R+K + R+K K+R
Sbjct: 88 EADPVSRKRRKEKEKKKRRKEKRKQR 113
>06_02_0092 -
11624905-11625123,11625206-11625292,11625767-11625889,
11625992-11626351,11626427-11626511,11626603-11626661,
11627173-11627265,11627360-11627464,11627539-11627636,
11627811-11627916,11628009-11628131,11628986-11629021,
11629113-11629310,11629415-11629612,11629917-11630056,
11630181-11630322,11630416-11630556
Length = 770
Score = 28.7 bits (61), Expect = 4.4
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Frame = -1
Query: 648 GGSMWVNKDQLE--QLLVEKISDLEYDNFKVVMERLVSLPYSYRYKDFIEKFRKPLAVQ- 478
G WVN+D++E LL +++ + Y K + V PY ++ K + FR Q
Sbjct: 557 GSGSWVNEDEVEFITLLYHQMA-MRYPELKSSSQVAVISPYRHQVKLLKDHFRSTFGDQS 615
Query: 477 KFALEIPKPNYDEEGRAYITTYECLR 400
K +++ + + + + C+R
Sbjct: 616 KEVIDVNTVDGFQGREKEVVIFSCVR 641
>04_03_0946 +
20975955-20976095,20976189-20976330,20976449-20976588,
20976893-20977090,20977195-20977392,20977484-20977519,
20978374-20978496,20978589-20978694,20978869-20978966,
20979041-20979145,20979240-20979332,20979842-20979900,
20979984-20980068,20980144-20980503,20980606-20980728,
20981203-20981289,20981372-20981590
Length = 770
Score = 28.7 bits (61), Expect = 4.4
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Frame = -1
Query: 648 GGSMWVNKDQLE--QLLVEKISDLEYDNFKVVMERLVSLPYSYRYKDFIEKFRKPLAVQ- 478
G WVN+D++E LL +++ + Y K + V PY ++ K + FR Q
Sbjct: 557 GSGSWVNEDEVEFITLLYHQMA-MRYPELKSSSQVAVISPYRHQVKLLKDHFRSTFGDQS 615
Query: 477 KFALEIPKPNYDEEGRAYITTYECLR 400
K +++ + + + + C+R
Sbjct: 616 KEVIDVNTVDGFQGREKEVVIFSCVR 641
>01_01_0631 - 4752606-4752706,4754039-4755578
Length = 546
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = +2
Query: 152 ISLSTKLRRPQAIPHLMAPDWPEGPPPSTLHSTSTRFCI 268
IS+S +L +P L+ DWP+GP PS L +TS + I
Sbjct: 109 ISVSFELVKPPETS-LLTLDWPQGPRPS-LGTTSYPYVI 145
>07_03_1399 -
26274064-26274303,26274395-26274652,26274791-26274916,
26275012-26275109,26275200-26275265,26275350-26275395
Length = 277
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -1
Query: 633 VNKDQLEQLLVEKISDLEYDNFKVVMERLVSLPYSYRYKDF 511
+NK Q+E+ LV K+ Y F M L L Y + Y DF
Sbjct: 41 LNKLQIEESLVPKMCLDLYREFGTTMAGLKVLGYDFDYDDF 81
>03_04_0201 -
18409088-18409306,18409389-18409475,18409950-18410072,
18410175-18410534,18410610-18410694,18410780-18410838,
18411350-18411442,18411537-18411641,18411716-18411813,
18411988-18412093,18412186-18412308,18413163-18413198,
18413290-18413487,18413592-18413789,18414094-18414233,
18414356-18414497,18414591-18414731
Length = 770
Score = 28.3 bits (60), Expect = 5.8
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Frame = -1
Query: 648 GGSMWVNKDQLE--QLLVEKISDLEYDNFKVVMERLVSLPYSYRYKDFIEKFRKPLAVQ- 478
G WVN+D++E LL +++ + Y K + V PY ++ K + FR Q
Sbjct: 557 GSGSWVNEDEVEFITLLYHQMA-MRYPELKSSSQVAVISPYRHQVKLLKDHFRSTFGDQS 615
Query: 477 KFALEIPKPNYDEEGRAYITTYECLR 400
K +++ + + + + C+R
Sbjct: 616 KEVIDVNTVDGFQGCEKEVVIFSCVR 641
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,669,176
Number of Sequences: 37544
Number of extensions: 403191
Number of successful extensions: 1182
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1177
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -