Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_pT_N22
(666 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L11247-4|AAK84520.1| 392|Caenorhabditis elegans Hypothetical pr... 89 3e-18
Z78413-6|CAB01658.1| 144|Caenorhabditis elegans Hypothetical pr... 50 1e-06
U80953-3|AAB52554.1| 350|Caenorhabditis elegans Abnormal dauer ... 31 0.56
U72884-1|AAC47389.1| 350|Caenorhabditis elegans DAF-7 protein. 31 0.56
U72883-1|AAC47390.1| 350|Caenorhabditis elegans dauer larva dev... 31 0.56
U23529-10|AAK39162.2| 307|Caenorhabditis elegans Hypothetical p... 29 2.2
U53335-1|AAA96169.1| 431|Caenorhabditis elegans Hypothetical pr... 28 6.8
AF067216-4|AAC17526.1| 262|Caenorhabditis elegans Hypothetical ... 28 6.8
AF067216-3|AAC17525.1| 430|Caenorhabditis elegans Hypothetical ... 28 6.8
>L11247-4|AAK84520.1| 392|Caenorhabditis elegans Hypothetical
protein F09G8.3 protein.
Length = 392
Score = 89.0 bits (211), Expect = 3e-18
Identities = 71/226 (31%), Positives = 105/226 (46%), Gaps = 23/226 (10%)
Frame = -1
Query: 651 LGGSMWVNKDQLEQLLVEKISDLEYDNFKVVMERLVSLPYSYRYKDFIEKFRKPLAV--- 481
L GS WV D+L++ L EK S Y + E L SLP S + F+ +FR+P+
Sbjct: 170 LSGSQWVTADKLKKKLSEKFSKELYGQVIIAFEHLASLPGSAIEQKFLMEFREPMTASTG 229
Query: 480 -QKFALEIPKPNY-DEEGRAYI-TTYECLRKKARGDVTIRSPGTGKITINKKDITYFDDV 310
+ F IP+ + R Y T C K R V + G GK I+ + F +
Sbjct: 230 SKLFGPAIPEVHVCAVTNRRYAEVTTRC--KDTRATVKVTDAGKGKFDIDGLQLHDFRHL 287
Query: 309 QSREQVLFPLIFTGMQNRVDVECN-----------------VEGGGPSGQSGAIRWGIAW 181
Q+RE +L P+I + R DV + GG S A+R G A
Sbjct: 288 QAREILLAPMIVSQSLGRFDVTATTSCISNTLPEAPNKAPLMRSGGMSALPRAVRHGTAL 347
Query: 180 GLRSFVDKDMLQQMQVAGLLTRDHRRRERKKPGQPGARKKPTWKKR 43
+ + + + ++ ++++GLLT D R+ ER K QPGAR K WK+R
Sbjct: 348 CVAA-LQPEAIEPLRLSGLLTLDPRKNERSKVNQPGARAKWIWKRR 392
>Z78413-6|CAB01658.1| 144|Caenorhabditis elegans Hypothetical
protein T01C3.6 protein.
Length = 144
Score = 50.0 bits (114), Expect = 1e-06
Identities = 39/126 (30%), Positives = 58/126 (46%), Gaps = 12/126 (9%)
Frame = -1
Query: 402 RKKARGDVTIRSPGTGKITINKKDITYFDDVQSREQVLFPLIFTGMQN--RVDVECNVEG 229
RKK V G G I +N + + + + R ++ PL+ G + VD+ V G
Sbjct: 13 RKKTATAVAHCKKGQGLIKVNGRPLEFLEPQILRIKLQEPLLLVGKERFQDVDIRIRVSG 72
Query: 228 GGPSGQSGAIRWGIAWGL----RSFVDKDMLQQMQVA------GLLTRDHRRRERKKPGQ 79
GG Q A+R +A L +VD+ ++++ LL D RRRE KK G
Sbjct: 73 GGHVAQIYAVRQALAKALVAYYHKYVDEQSKRELKNIFAAYDKSLLVADPRRRESKKFGG 132
Query: 78 PGARKK 61
PGAR +
Sbjct: 133 PGARAR 138
>U80953-3|AAB52554.1| 350|Caenorhabditis elegans Abnormal dauer
formation protein 7 protein.
Length = 350
Score = 31.5 bits (68), Expect = 0.56
Identities = 19/76 (25%), Positives = 32/76 (42%)
Frame = -1
Query: 534 YSYRYKDFIEKFRKPLAVQKFALEIPKPNYDEEGRAYITTYECLRKKARGDVTIRSPGTG 355
Y Y+D +EK + + V+ P+Y E + ++ R D+ +++ T
Sbjct: 70 YLEMYRDLLEKDEQDMGVEMSFYTAKDPSYGENPSQLVAKFDVTNDLERSDI-LQATLTV 128
Query: 354 KITINKKDITYFDDVQ 307
I I KD DVQ
Sbjct: 129 SIEIPAKDSGMLQDVQ 144
>U72884-1|AAC47389.1| 350|Caenorhabditis elegans DAF-7 protein.
Length = 350
Score = 31.5 bits (68), Expect = 0.56
Identities = 19/76 (25%), Positives = 32/76 (42%)
Frame = -1
Query: 534 YSYRYKDFIEKFRKPLAVQKFALEIPKPNYDEEGRAYITTYECLRKKARGDVTIRSPGTG 355
Y Y+D +EK + + V+ P+Y E + ++ R D+ +++ T
Sbjct: 70 YLEMYRDLLEKDEQDMGVEMSFYTAKDPSYGENPSQLVAKFDVTNDLERSDI-LQATLTV 128
Query: 354 KITINKKDITYFDDVQ 307
I I KD DVQ
Sbjct: 129 SIEIPAKDSGMLQDVQ 144
>U72883-1|AAC47390.1| 350|Caenorhabditis elegans dauer larva
development regulatorygrowth factor protein.
Length = 350
Score = 31.5 bits (68), Expect = 0.56
Identities = 19/76 (25%), Positives = 32/76 (42%)
Frame = -1
Query: 534 YSYRYKDFIEKFRKPLAVQKFALEIPKPNYDEEGRAYITTYECLRKKARGDVTIRSPGTG 355
Y Y+D +EK + + V+ P+Y E + ++ R D+ +++ T
Sbjct: 70 YLEMYRDLLEKDEQDMGVEMSFYTAKDPSYGENPSQLVAKFDVTNDLERSDI-LQATLTV 128
Query: 354 KITINKKDITYFDDVQ 307
I I KD DVQ
Sbjct: 129 SIEIPAKDSGMLQDVQ 144
>U23529-10|AAK39162.2| 307|Caenorhabditis elegans Hypothetical
protein C15B12.6 protein.
Length = 307
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = -1
Query: 657 LQLGGSMWVNKDQLEQLLVEKI-SDLEYDNFKVVMERLVSLPYSYRYKDFIEKFR 496
L L G W D L VE I D+ D+ +V + ++LP + R K+F ++ R
Sbjct: 12 LDLDGDDWEEVDVLSDKCVEDILEDVHIDDPILVSDVRITLPANIRIKNFKKEIR 66
>U53335-1|AAA96169.1| 431|Caenorhabditis elegans Hypothetical
protein C55C3.4 protein.
Length = 431
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -1
Query: 162 DKDMLQQMQVAGLLTRDHRRRERKKPGQ 79
DKD+L Q GLL R+ + KPGQ
Sbjct: 3 DKDLLHQKYYHGLLPREDIQEMLNKPGQ 30
>AF067216-4|AAC17526.1| 262|Caenorhabditis elegans Hypothetical
protein C35E7.10b protein.
Length = 262
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -1
Query: 162 DKDMLQQMQVAGLLTRDHRRRERKKPGQ 79
DKD+L Q GLL R+ + KPGQ
Sbjct: 3 DKDLLHQKYYHGLLPREDIQEMLNKPGQ 30
>AF067216-3|AAC17525.1| 430|Caenorhabditis elegans Hypothetical
protein C35E7.10a protein.
Length = 430
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -1
Query: 162 DKDMLQQMQVAGLLTRDHRRRERKKPGQ 79
DKD+L Q GLL R+ + KPGQ
Sbjct: 3 DKDLLHQKYYHGLLPREDIQEMLNKPGQ 30
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,165,532
Number of Sequences: 27780
Number of extensions: 361119
Number of successful extensions: 967
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -