Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_N14
         (315 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8C9.11 |||BolA domain protein|Schizosaccharomyces pombe|chr ...    67   5e-13
SPCC4B3.11c |||conserved eukaryotic protein|Schizosaccharomyces ...    55   2e-09
SPBC16E9.06c |uvi31||BolA domain UV inducedv protein Uvi31|Schiz...    31   0.054
SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb...    25   2.0  
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual      25   3.6  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    24   6.3  
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po...    24   6.3  
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    23   8.3  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    23   8.3  

>SPAC8C9.11 |||BolA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 80

 Score = 67.3 bits (157), Expect = 5e-13
 Identities = 32/50 (64%), Positives = 36/50 (72%)
 Frame = -1

Query: 198 EVTDESDGCGAKFSVLIVSDKFKGKPLLARHRLVNTLLQEELKTIHAFTQ 49
           E+ D S GCG  F V+IVS  F+GK  LARHRLVN  LQE +K IHAFTQ
Sbjct: 21  EIQDMSGGCGQNFEVIIVSPLFEGKSTLARHRLVNHKLQEVIKDIHAFTQ 70


>SPCC4B3.11c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 116

 Score = 55.2 bits (127), Expect = 2e-09
 Identities = 28/61 (45%), Positives = 38/61 (62%)
 Frame = -1

Query: 195 VTDESDGCGAKFSVLIVSDKFKGKPLLARHRLVNTLLQEELKTIHAFTQKTLIC*SVEDT 16
           V D S GCG+ + V I S  F+GK  LA+HRLVN++L+EE++ +H     T     VED 
Sbjct: 51  VIDVSGGCGSMYQVAIKSKAFQGKNTLAQHRLVNSILKEEIRNMHGLNLST----EVEDD 106

Query: 15  I 13
           I
Sbjct: 107 I 107


>SPBC16E9.06c |uvi31||BolA domain UV inducedv protein
           Uvi31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 102

 Score = 30.7 bits (66), Expect = 0.054
 Identities = 15/29 (51%), Positives = 20/29 (68%)
 Frame = -1

Query: 162 FSVLIVSDKFKGKPLLARHRLVNTLLQEE 76
           F + IVS +F G   +ARHRLV  LL++E
Sbjct: 54  FRLEIVSPEFSGMSRVARHRLVYGLLKDE 82


>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 955

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
 Frame = +1

Query: 49  LGERVDCLQFLLKQCVHQSMPGKKRFPFELVRYYEN------RKLGAASVALICHLLNRA 210
           L + +D +   L   VH   P  +  P  +VR +++      R L   S  LIC  +++ 
Sbjct: 620 LADNIDIVTIFLS-LVHPPSPAGELHP--IVRLFQDIWPILSRTLDTFSDVLICERISKL 676

Query: 211 LSNFLNT 231
           L NF+ T
Sbjct: 677 LKNFIYT 683


>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 24.6 bits (51), Expect = 3.6
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 201 EEVTDESDGCGAKFSVLIVSDKFKGKP 121
           EE+      CG+   V I+ DKF G P
Sbjct: 69  EELQSHFASCGSVNRVTILCDKFTGHP 95


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 257 DRSARGRGRPTTHRPA 304
           +R  RGRGRP   RP+
Sbjct: 336 NRPKRGRGRPRLERPS 351


>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 556

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -1

Query: 210 CSIEEVTDESD-GCGAKFSVLIVSDKFKGKPLLARH 106
           C +E  ++E+    G   + L+V DKF+ KPL + H
Sbjct: 378 CGLEWNSNENLLASGGNDNALMVWDKFEEKPLYSFH 413


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1328

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 66   LSSVPLEAMCSPIYAWQEEVSL 131
            +S   L+  CSP +  Q EVS+
Sbjct: 1175 MSGTTLDGRCSPYHGMQVEVSM 1196


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +1

Query: 127 PFELVRYYENRKLGA 171
           PF L+RYYE+++L A
Sbjct: 930 PFGLLRYYEDQELYA 944


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,233,487
Number of Sequences: 5004
Number of extensions: 21600
Number of successful extensions: 69
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)