Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_pT_N14
(315 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1460 - 37519393-37519591,37519724-37519746,37519843-37519905 60 3e-10
09_02_0168 - 5253588-5254688 43 6e-05
03_02_0188 + 6251256-6251561 38 0.002
12_01_0519 - 4102251-4102352,4102522-4103439,4104763-4104837 28 1.8
05_03_0414 + 13650483-13651388,13651559-13651657 27 2.3
04_01_0600 + 7907142-7908047,7908218-7908316 27 2.3
06_01_0815 + 6166861-6166953,6167074-6167173,6168569-6168639,616... 27 3.1
02_05_0810 - 31934965-31935013,31935096-31935217,31935328-319355... 27 4.1
04_04_0844 - 28637393-28638118,28638206-28638283,28638431-286386... 26 5.4
03_04_0054 + 16883678-16883719,16884667-16884723,16884852-168849... 26 5.4
09_03_0190 - 13303407-13303895 26 7.1
05_03_0593 - 15911579-15912141,15915025-15915220 25 9.4
03_02_0697 - 10487661-10488342,10490474-10490556 25 9.4
>01_06_1460 - 37519393-37519591,37519724-37519746,37519843-37519905
Length = 94
Score = 60.5 bits (140), Expect = 3e-10
Identities = 27/50 (54%), Positives = 35/50 (70%)
Frame = -1
Query: 195 VTDESDGCGAKFSVLIVSDKFKGKPLLARHRLVNTLLQEELKTIHAFTQK 46
VTD S GCGA + + +VS+KF+GK LL RHR+VNT L + IHA + K
Sbjct: 23 VTDTSGGCGASYEIEVVSEKFEGKRLLERHRMVNTALAPHMAEIHAVSIK 72
>09_02_0168 - 5253588-5254688
Length = 366
Score = 42.7 bits (96), Expect = 6e-05
Identities = 21/38 (55%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Frame = -1
Query: 162 FSVLIVSDKFKGKPLLARHRLVNTLLQEELKT-IHAFT 52
F+V +VS+ F+GK LL RHR V LLQ+ELK +HA +
Sbjct: 320 FNVRVVSEAFQGKSLLKRHRAVYDLLQDELKNGLHALS 357
>03_02_0188 + 6251256-6251561
Length = 101
Score = 37.5 bits (83), Expect = 0.002
Identities = 16/38 (42%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Frame = -1
Query: 162 FSVLIVSDKFKGKPLLARHRLVNTLLQEELKT-IHAFT 52
F++ ++S KF+G+ L+ RHR+V LL +EL + +HA +
Sbjct: 53 FNIRVISPKFEGQSLVKRHRMVYDLLTDELNSGLHAIS 90
>12_01_0519 - 4102251-4102352,4102522-4103439,4104763-4104837
Length = 364
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1
Query: 213 KCSIEEVTDESDGCGAKFSVLIVSD 139
+CS VT +DGC AK SV ++D
Sbjct: 216 QCSFRPVTCPNDGCRAKVSVRCMTD 240
>05_03_0414 + 13650483-13651388,13651559-13651657
Length = 334
Score = 27.5 bits (58), Expect = 2.3
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -1
Query: 213 KCSIEEVTDESDGCGAKFSVLIVSD 139
+CS VT +DGC AK SV + D
Sbjct: 187 QCSFRPVTCPNDGCRAKVSVRCMQD 211
>04_01_0600 + 7907142-7908047,7908218-7908316
Length = 334
Score = 27.5 bits (58), Expect = 2.3
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -1
Query: 213 KCSIEEVTDESDGCGAKFSVLIVSD 139
+CS VT +DGC AK SV + D
Sbjct: 187 QCSFRPVTCPNDGCRAKVSVRCMQD 211
>06_01_0815 +
6166861-6166953,6167074-6167173,6168569-6168639,
6169873-6170064,6170168-6170290
Length = 192
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 210 CSIEEVTDESDGCGAKFSVLIVSDKFKGKP 121
C+ EEV + CG V I++DKF G+P
Sbjct: 93 CTPEEVQQHFNSCGTVNRVTILTDKF-GQP 121
>02_05_0810 -
31934965-31935013,31935096-31935217,31935328-31935519,
31937689-31937759,31938708-31938819,31938911-31939015
Length = 216
Score = 26.6 bits (56), Expect = 4.1
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 210 CSIEEVTDESDGCGAKFSVLIVSDKFKGKP 121
C+ EEV CG V I++DKF G+P
Sbjct: 101 CTPEEVQQHFQACGTVNRVTILTDKF-GQP 129
>04_04_0844 -
28637393-28638118,28638206-28638283,28638431-28638607,
28639124-28639537
Length = 464
Score = 26.2 bits (55), Expect = 5.4
Identities = 9/37 (24%), Positives = 20/37 (54%)
Frame = -3
Query: 157 CSHSIGQVQRETSSCQA*IGEHIASRGTEDNPRVHPE 47
C H++ +VQR +C+A +H+++ P + +
Sbjct: 171 CMHALVRVQRRARACRAIRSQHVSAHPGPPTPEKYDQ 207
>03_04_0054 +
16883678-16883719,16884667-16884723,16884852-16884959,
16885028-16885102,16885744-16885833,16885950-16886057,
16886137-16886211,16886371-16886433,16886531-16886924,
16888539-16888651,16888799-16888829,16888987-16889864
Length = 677
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -1
Query: 195 VTDESDGCGAKFSVLIVS-DKFKGKPLLARHRLVNTLLQEEL 73
+ D +D F ++ DK+ GK L + L+ +L++EEL
Sbjct: 367 ILDSADFATMTFGDVVKEVDKYFGKDLFEKKPLIRSLIEEEL 408
>09_03_0190 - 13303407-13303895
Length = 162
Score = 25.8 bits (54), Expect = 7.1
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = -1
Query: 213 KCSIEEVTDESDGCGAKFSVL 151
K + E + DES+GC ++FS+L
Sbjct: 41 KAAKEVLYDESNGCDSEFSIL 61
>05_03_0593 - 15911579-15912141,15915025-15915220
Length = 252
Score = 25.4 bits (53), Expect = 9.4
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +2
Query: 11 IIVSSTDQQIKVFWVNAWIV 70
++ TD K++WV+AW V
Sbjct: 168 VLAEGTDATGKLYWVHAWTV 187
>03_02_0697 - 10487661-10488342,10490474-10490556
Length = 254
Score = 25.4 bits (53), Expect = 9.4
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +2
Query: 11 IIVSSTDQQIKVFWVNAWIV 70
+I TD +++WV+AW V
Sbjct: 159 VIAEGTDDTRQLYWVHAWTV 178
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,289,189
Number of Sequences: 37544
Number of extensions: 147632
Number of successful extensions: 339
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 339
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 386885760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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