Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_N13
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    27   2.3  
SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         26   5.2  
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi...    25   6.9  
SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma...    25   6.9  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   9.1  
SPBC2A9.12 |orc6|SPBC2D10.02|origin recognition complex subunit ...    25   9.1  
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    25   9.1  
SPBC887.16 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual         25   9.1  
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||...    25   9.1  

>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = +1

Query: 457 KYIVYLLQK*QYIHYNL*L*LRKG--EESRLTASLAERGEILAVVDLRRRHVVTLY 618
           +Y+  L+QK + I   L    RK   +E R+T   +E   +++ +D  +RH   L+
Sbjct: 122 EYVAPLIQKLEIIEKKLDKSFRKNMEDELRITRLASENNVLISRIDRTKRHFSELF 177


>SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 4   TLXLFDLIFKISLFTVPSLHLSTQTHXIKC 93
           ++ L +  F  S   V SLHL T  H  KC
Sbjct: 23  SISLSNSFFPHSFMFVKSLHLMTSQHIFKC 52


>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
           Air1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 14/66 (21%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
 Frame = -2

Query: 448 VYCITLKSV--YVGIGSKFCELIITCNAAWGLTCFCGKE*RGRIRLV*VLFFDTHTTATY 275
           V C T  ++  ++ +   + +  + C     +   C +  +   R+      DTHT++T 
Sbjct: 105 VLCTTCGAIDDHISVRCPWTKKCMNCGLLGHIAARCSEPRKRGPRVCRTCHTDTHTSSTC 164

Query: 274 LLLWIY 257
            L+W Y
Sbjct: 165 PLIWRY 170


>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 835

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 98  VISSQNTILTCDGVDSNSSIACRQ 169
           VIS++N I+T  G+DS+    C Q
Sbjct: 388 VISAENKIVTYGGMDSHVHFICPQ 411


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +2

Query: 368 GSVASYNQLTKFRANTYVD*FQCNTIHTLVNILYIY 475
           GS+        F    Y+D F  +   +L+NIL++Y
Sbjct: 866 GSLEQIRNTDLFILQKYIDYFSSHPHDSLINILHLY 901


>SPBC2A9.12 |orc6|SPBC2D10.02|origin recognition complex subunit
           Orc6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 264

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = -2

Query: 592 EGRRQQGFPLSQLDSQ*V*ILLPFEARVTNYNVCTVIFEVNIQYIYKS 449
           E ++Q+  P S + S    I + +E R+ NY +     E  IQY YKS
Sbjct: 212 ESQKQRIKPWSGIASM---IQIDYEKRLQNYPIWKACIEERIQY-YKS 255


>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -2

Query: 304 FFDTHTTATYLLLWIYNNSFYYIVITPAFH 215
           F +T   +TYLL WI     Y    TP  H
Sbjct: 196 FAETCRMSTYLLAWIVAELEYVEYFTPGKH 225


>SPBC887.16 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 109

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 472 NIQYIYKSVYCITLKSVYVGIGSKFCELI 386
           N+QY YK ++C  +K V  G+ + F   I
Sbjct: 5   NLQYPYKVLWCAQVKVVKTGLINFFAPSI 33


>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +1

Query: 541 LTASLAER-GEILAVVDLRRRHVVTLYR 621
           L ASL E+  ++ +++DL R  V+ LYR
Sbjct: 61  LRASLNEKINQLTSIIDLTREQVLGLYR 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,518,319
Number of Sequences: 5004
Number of extensions: 50944
Number of successful extensions: 101
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)